Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v2.0

Name: DNA-directed RNA polymerase, subunit 2, domain 6

Term: IPR007120  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene832 SustainPine v2.0 1114
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna polymerase iv second largest subunit 0.0
Complete
sp_v2.0_unigene1207 SustainPine v2.0 1754
AutoFact: Transcription factor bHLH62 n=1 Tax=Arabidopsis thaliana RepID=BH062_ARATH 7.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bpe 0.0
Complete
sp_v2.0_unigene1862 SustainPine v2.0 2048
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bhlh62-like 0.0
C-terminus
sp_v2.0_unigene3510 SustainPine v2.0 1482
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 4.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: bhlh transcription factor 0.0
Complete
sp_v2.0_unigene3972 SustainPine v2.0 916
AutoFact: transcription factor bHLH76 [Arabidopsis thaliana] gb|AAS79545.1| putative transcription factor [Arabidopsis thaliana] emb|CAG25856.1| hypothetical protein [Arabidopsis thaliana] gb|AEE30669.1| transcription factor bHLH76 [Arabidopsis thaliana] 3.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bhlh76 0.0
C-terminus
sp_v2.0_unigene6365 SustainPine v2.0 943
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNX6_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-directed rna polymerase iii subunit rpc2 0.0
Complete
sp_v2.0_unigene9127 SustainPine v2.0 686
AutoFact: Helix-loop-helix protein 1A n=1 Tax=Pinus taeda RepID=Q9SQ79_PINTA 0.0
FL-Next: tr=Helix-loop-helix protein 1A; Pinus taeda (Loblolly pine). 0.0
Blast2go: helix-loop-helix protein 1 a 0.0
Internal
sp_v2.0_unigene9643 SustainPine v2.0 1333
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNX6_PHYPA 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene10049 SustainPine v2.0 1126
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Berberidopsis corallina RepID=Q1L5Z7_9MAGN 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii second largest subunit 0.0
Internal
sp_v2.0_unigene10832 SustainPine v2.0 3289
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TX75_VITVI 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta 2; Pinus lambertiana (Sugar pine). Plastid; Chloroplast. 0.0
Blast2go: dna-directed rna polymerase i subunit rpa2 0.0
C-terminus
sp_v2.0_unigene10869 SustainPine v2.0 2179
AutoFact: Helix-loop-helix protein 1A n=1 Tax=Pinus taeda RepID=Q9SQ79_PINTA 0.0
FL-Next: tr=Helix-loop-helix protein 1A; Pinus taeda (Loblolly pine). 0.0
Blast2go: transcription factor bhlh130-like 0.0
Complete
sp_v2.0_unigene12119 SustainPine v2.0 614
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta; Pinus rzedowskii (Mexican pine). Plastid; Chloroplast. 0.0
Blast2go: rna polymerase iv second largest subunit 0.0
Internal
sp_v2.0_unigene20290 SustainPine v2.0 2671
AutoFact: DNA-directed RNA polymerase n=26 Tax=Embryophyta RepID=A9SJE5_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna polymerase ii second largest subunit 0.0
Complete
sp_v2.0_unigene22403 SustainPine v2.0 2479
AutoFact: BHLH transcription factor PTF1-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6EPZ6_ORYSJ 9.94922e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bhlh66-like 0.0
Complete
sp_v2.0_unigene24853 SustainPine v2.0 2013
AutoFact: basic helix-loop-helix (bHLH) -like [Oryza sativa Japonica Group] dbj|BAD19276.1| basic helix-loop-helix (bHLH) -like [Oryza sativa Japonica Group] 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
sp_v2.0_unigene26969 SustainPine v2.0 939
AutoFact: DNA-directed RNA polymerase n=8 Tax=Andropogoneae RepID=C5Y8Y9_SORBI 0.0
FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
Blast2go: dna-directed rna polymerase d subunit 2a-like 0.0
Internal
sp_v2.0_unigene28140 SustainPine v2.0 1959
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 9.94922e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bhlh63-like 0.0
C-terminus
sp_v2.0_unigene31231 SustainPine v2.0 440
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase iv 0.0
Internal
sp_v2.0_unigene34188 SustainPine v2.0 658
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna polymerase iv second largest subunit 0.0
Complete
sp_v2.0_unigene34242 SustainPine v2.0 659
AutoFact: Basic helix-loop-helix family protein-like protein (Fragment) n=4 Tax=Picea sitchensis RepID=E0ZL73_PICSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: basic helix-loop-helix family protein 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain