Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Zinc finger, LIM-type

Term: IPR001781  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene2287 SustainPine v2.0 2479
AutoFact: LIM domain containing protein-like n=4 Tax=Oryza sativa RepID=Q5SMM0_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc ion binding 0.0
Complete
sp_v2.0_unigene5611 SustainPine v2.0 860
AutoFact: metallophosphoesterase [Anabaena variabilis ATCC 29413] gb|ABA21612.1| Metallophosphoesterase [Anabaena variabilis ATCC 29413] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: metallophosphatase domain-containing protein 0.0
N-terminus
sp_v2.0_unigene6287 SustainPine v2.0 682
AutoFact: WS02840.CR_K08 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02840_K08 3', mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
sp_v2.0_unigene12917 SustainPine v2.0 1445
AutoFact: LIM domain protein WLIM-1 [Helianthus annuus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pollen-specific protein 0.0
Complete
sp_v2.0_unigene13707 SustainPine v2.0 2485
AutoFact: similar to zinc ion binding 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc ion binding 0.0
Complete
sp_v2.0_unigene15340 SustainPine v2.0 1318
AutoFact: putative pollen specific LIM domain-containing protein [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pollen-specific protein 0.0
Complete
sp_v2.0_unigene17060 SustainPine v2.0 1501
AutoFact: Lim domain protein n=2 Tax=Pinaceae RepID=F4MKL9_PINPS 0.0
FL-Next: tr=Lim domain protein; Pinus pinaster (Maritime pine). 0.0
Blast2go: gata type zinc finger transcription factor-like protein 0.0
Complete
sp_v2.0_unigene17245 SustainPine v2.0 1421
AutoFact: Lim domain protein n=2 Tax=Pinaceae RepID=F4MKL9_PINPS 0.0
FL-Next: tr=Lim domain protein; Pinus pinaster (Maritime pine). 0.0
Blast2go: gata type zinc finger transcription factor-like protein 0.0
Complete
sp_v2.0_unigene19667 SustainPine v2.0 2474
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene28117 SustainPine v2.0 1410
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene41338 SustainPine v2.0 489
AutoFact: snRNA-activating protein complex subunit, putative n=1 Tax=Ricinus communis RepID=B9SGW6_RICCO 0.0
FL-Next: tr=snRNA-activating protein complex subunit, putative; Ricinus communis (Castor bean). 0.0
Blast2go: snrna activating complex family protein 0.0
Putative C-terminus
sp_v2.0_unigene49078 SustainPine v2.0 404
AutoFact: Protein SCAR2, putative n=1 Tax=Ricinus communis RepID=B9SL38_RICCO 0.0
FL-Next: sp=SCAR-like protein 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene57345 SustainPine v2.0 438
AutoFact: Pollen-specific protein SF3, putative n=1 Tax=Ricinus communis RepID=B9R6Z5_RICCO 3.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor lim1 1.95518e-24
Putative C-terminus
sp_v2.0_unigene61198 SustainPine v2.0 928
AutoFact: LIM domain protein PLIM1 [Nicotiana tabacum] 3.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pollen-specific protein 2.05072e-37
Complete
sp_v2.0_unigene68743 SustainPine v2.0 513
AutoFact: LIM2 transcription factor (Fragment) n=2 Tax=Pinaceae RepID=B1PPT4_PINPS 7.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gata type zinc finger transcription factor-like protein 0.0
Putative Complete
sp_v2.0_unigene70135 SustainPine v2.0 390
AutoFact: Lim domain protein n=2 Tax=Pinaceae RepID=F4MKL9_PINPS 2.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lim domain-containing protein 0.0
Putative N-terminus
sp_v2.0_unigene73808 SustainPine v2.0 377
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein da1-related 1-like isoform 2 1.95402e-36
N-terminus
sp_v2.0_unigene78012 SustainPine v2.0 321
AutoFact: Lim domain protein n=2 Tax=Pinaceae RepID=F4MKL9_PINPS 2.0e-25
FL-Next: tr=Lim domain protein; Pinus pinaster (Maritime pine). 0.0
Blast2go: lim domain-containing protein 3.54631e-32
Internal
sp_v2.0_unigene81345 SustainPine v2.0 627
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T0R1_RICCO 4.99997e-41
FL-Next: sp=BTB/POZ domain-containing protein At5g60050; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 9.04118e-41
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain