Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: SNF2-related

Term: IPR000330  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene43298 SustainPine v2.0 334
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 4.0e-33
FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: chromatin remodeling complex subunit 1.7119e-39
Internal
sp_v2.0_unigene44193 SustainPine v2.0 191
AutoFact: DEAD-like helicase domain-containing protein [Arabidopsis thaliana] ref|NP_001184938.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] ref|NP_001184939.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gb|AEE28314 8.0e-09
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dead-like helicase domain-containing protein 2.16647e-11
Putative N-terminus
sp_v2.0_unigene44793 SustainPine v2.0 493
AutoFact: SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gb|AEC10493.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana] 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: snf2 and helicase domain-containing protein 8.09275e-26
Putative Complete
sp_v2.0_unigene45160 SustainPine v2.0 236
AutoFact: HEAT1_10_A03.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_10_A03_A029 5', mRNA sequence. 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: chromatin remodeling complex subunit 1.0404e-13
Internal
sp_v2.0_unigene46553 SustainPine v2.0 396
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9H252_POPTR 5.0e-30
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: chromatin remodeling complex subunit 6.26027e-35
Internal
sp_v2.0_unigene46819 SustainPine v2.0 299
AutoFact: CHD3-type chromatin-remodeling factor PICKLE n=2 Tax=Arabidopsis RepID=PKL_ARATH 6.99949e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
sp_v2.0_unigene47017 SustainPine v2.0 348
AutoFact: DNA helicase INO80 complex-like 1 n=1 Tax=Arabidopsis thaliana RepID=F4J277_ARATH 0.0
FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
sp_v2.0_unigene47087 SustainPine v2.0 308
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTY5_RICCO 3.0e-26
FL-Next: tr=ATP binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: chromatin remodeling complex subunit 1.37085e-30
Internal
sp_v2.0_unigene48030 SustainPine v2.0 191
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: atpase splayed 6.07667e-25
Internal
sp_v2.0_unigene48337 SustainPine v2.0 184
AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I5Q4_POPTR 4.0e-09
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: dead-like helicase domain-containing protein 2.85637e-12
Internal
sp_v2.0_unigene49210 SustainPine v2.0 521
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RLT0_RICCO 7.00649e-44
FL-Next: tr=ATP binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: zinc finger ran-binding domain-containing protein 3-like 0.0
Internal
sp_v2.0_unigene50644 SustainPine v2.0 146
AutoFact: Chromatin remodeling factor18 n=2 Tax=Arabidopsis RepID=F4HWU9_ARATH 1.0e-12
FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: snf2 domain-containing protein 9.34388e-16
Internal
sp_v2.0_unigene54429 SustainPine v2.0 350
AutoFact: DEAD-like helicase domain-containing protein [Arabidopsis thaliana] ref|NP_001184938.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] ref|NP_001184939.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gb|AEE28314 3.0e-37
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dead-like helicase domain-containing protein 0.0
Internal
sp_v2.0_unigene55224 SustainPine v2.0 269
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9N1U4_POPTR 1.0e-18
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: snf2 histone linker phd ring 4.89645e-22
Internal
sp_v2.0_unigene55325 SustainPine v2.0 237
AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T5F7_PHYPA 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: snf2 family dna-dependent atpase 1.98011e-23
Internal
sp_v2.0_unigene55359 SustainPine v2.0 296
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: dead-like helicase domain-containing protein 8.0435e-23
Internal
sp_v2.0_unigene57092 SustainPine v2.0 167
AutoFact: Defective in RNA-directed DNA methylation 1 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L1V4_ARALL 7.0e-12
FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: defective in rna-directed dna methylation 1 1.13327e-14
Internal
sp_v2.0_unigene57760 SustainPine v2.0 520
AutoFact: DUF1777 multi-domain protein 1.0e-17
Coding
sp_v2.0_unigene57798 SustainPine v2.0 587
AutoFact: chromodomain helicase DNA binding protein, putative (EC:2.7.11.1); K11643 chromodomain-helicase-DNA-binding protein 4 [EC:3.6.1.-] 0.0
FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
sp_v2.0_unigene59615 SustainPine v2.0 344
AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 1.0e-11
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Blast2go: chromodomain-helicase-dna-binding protein 2-like 5.46506e-44
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain