Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Zinc finger, RING-CH-type

Term: IPR011016  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene11906 SustainPine v2.0 1285
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_851231.1| RING/U-box domain-containing protein [Arabidopsis thaliana] dbj|BAB08241.1| unnamed protein product [Arabidopsis thaliana] gb|AED97347.1| RING/U-box domain-containing protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger (c3hc4-type ring finger) 0.0
Complete
sp_v2.0_unigene14083 SustainPine v2.0 669
AutoFact: PHD finger-containing protein [Arabidopsis thaliana] dbj|BAF01725.1| hypothetical protein [Arabidopsis thaliana] dbj|BAF02246.1| hypothetical protein [Arabidopsis thaliana] gb|AEE74631.1| PHD finger-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Histone-lysine N-methyltransferase ATX3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein binding protein 0.0
Internal
sp_v2.0_unigene17596 SustainPine v2.0 2165
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7TWM5_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene17946 SustainPine v2.0 691
AutoFact: shaggy-like kinase alpha [Arabidopsis thaliana] 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycogen synthase kinase-3 2.74593e-34
Putative Complete
sp_v2.0_unigene18512 SustainPine v2.0 1732
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] ref|NP_974396.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] emb|CAB61981.1| putative protein [Arabidopsis thaliana] dbj|BAE98651.1| hypothetical protein [Arabidop 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring fyve phd zinc finger-containing protein 0.0
Complete
sp_v2.0_unigene19839 SustainPine v2.0 638
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] ref|NP_849790.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] ref|NP_001117462.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gb|AAF87887.1| 3.0e-09
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v2.0_unigene21233 SustainPine v2.0 1804
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] ref|NP_974396.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] emb|CAB61981.1| putative protein [Arabidopsis thaliana] dbj|BAE98651.1| hypothetical protein [Arabidop 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring fyve phd zinc finger-containing protein 0.0
Complete
sp_v2.0_unigene22148 SustainPine v2.0 990
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] dbj|BAB09677.1| unnamed protein product [Arabidopsis thaliana] gb|AAP21185.1| At5g05830 [Arabidopsis thaliana] dbj|BAE99517.1| hypothetical protein [Arabidopsis thaliana] gb|AED90930.1| R 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 7.34841e-42
C-terminus
sp_v2.0_unigene23590 SustainPine v2.0 642
AutoFact: Predicted protein n=11 Tax=Physcomitrella patens RepID=A9S6L2_PHYPA 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: shaggy-related protein kinase 4 3.01264e-17
C-terminus
sp_v2.0_unigene26870 SustainPine v2.0 1333
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] dbj|BAB09677.1| unnamed protein product [Arabidopsis thaliana] gb|AAP21185.1| At5g05830 [Arabidopsis thaliana] dbj|BAE99517.1| hypothetical protein [Arabidopsis thaliana] gb|AED90930.1| R 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger 0.0
Complete
sp_v2.0_unigene27218 SustainPine v2.0 813
AutoFact: 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] 6.0e-33
FL-Next: sp=Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: 3-hydroxyisobutyrate dehydrogenase 1.51548e-40
C-terminus
sp_v2.0_unigene28384 SustainPine v2.0 933
AutoFact: [K] COG1678 Putative transcriptional regulator 4.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional regulator 0.0
C-terminus
sp_v2.0_unigene29628 SustainPine v2.0 511
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAC06154.1| expressed protein [Arabidopsis thaliana] gb|AAO00741.1| Unknown protein [Arabidopsis thaliana] gb|AAP13386.1| At2g45530 [Arabidopsis thaliana] gb|AEC10566.1| RING/U-box domain-cont 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 1.10323e-24
Internal
sp_v2.0_unigene32202 SustainPine v2.0 483
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AEE86323.1| RING/U-box domain-containing protein [Arabidopsis thaliana] 6.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring u-box domain-containing protein 1.32314e-29
N-terminus
sp_v2.0_unigene32976 SustainPine v2.0 492
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 0.0
Internal
sp_v2.0_unigene33139 SustainPine v2.0 675
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] dbj|BAB11496.1| unnamed protein product [Arabidopsis thaliana] gb|AAL31206.1| AT5g62460/K19B1_7 [Arabidopsis thaliana] gb|AAM98316.1| At5g62460/K19B1_7 [Arabidopsis thaliana] gb|AED97609. 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring fyve phd zinc finger-containing protein 7.16729e-22
Putative C-terminus
sp_v2.0_unigene33723 SustainPine v2.0 234
AutoFact: RING/FYVE/PHD zinc finger-containing protein n=4 Tax=Arabidopsis RepID=F4KCH0_ARATH 2.0e-19
FL-Next: tr=RING/FYVE/PHD zinc finger-containing protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ring fyve phd zinc finger-containing protein 3.99094e-19
Internal
sp_v2.0_unigene34098 SustainPine v2.0 658
AutoFact: 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 3-hydroxyisobutyrate dehydrogenase 0.0
N-terminus
sp_v2.0_unigene34258 SustainPine v2.0 279
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: ring u-box domain-containing protein 2.82164e-20
Internal
sp_v2.0_unigene35189 SustainPine v2.0 571
AutoFact: Membrane associated ring finger 1,8, putative n=1 Tax=Ricinus communis RepID=B9S8W6_RICCO 5.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: membrane associated ring finger 8.19023e-22
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain