Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Zinc finger, C3HC4 RING-type

Term: IPR018957  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene33232 SustainPine v2.0 635
• AutoFact: RING zinc finger protein-like n=1 Tax=Zea mays RepID=B6SMS1_MAIZE 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ring u-box domain-containing protein 1.09456e-16
Putative Complete
sp_v2.0_unigene33308 SustainPine v2.0 1315
• AutoFact: Zinc finger, C3HC4 type (RING finger) containing protein [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
sp_v2.0_unigene33337 SustainPine v2.0 442
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: e3 ubiquitin-protein ligase rglg1-like 1.85414e-07
Internal
sp_v2.0_unigene33382 SustainPine v2.0 1306
• AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDU7_RICCO 6.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ring finger protein 5.01595e-41
Complete
sp_v2.0_unigene33449 SustainPine v2.0 777
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: unknown [Picea sitchensis] 5.46552e-18
N-terminus
sp_v2.0_unigene33490 SustainPine v2.0 868
• AutoFact: uncharacterized protein [Arabidopsis thaliana] sp|Q94K98.2|Y1720_ARATH RecName: Full=UPF0392 protein At1g27200 gb|AAF79871.1|AC000348_24 T7N9.26 [Arabidopsis thaliana] gb|AAN12989.1| unknown protein [Arabidopsis thaliana] gb|AEE30793.1| uncharacterized pr 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
sp_v2.0_unigene33723 SustainPine v2.0 234
• AutoFact: RING/FYVE/PHD zinc finger-containing protein n=4 Tax=Arabidopsis RepID=F4KCH0_ARATH 2.0e-19
• FL-Next: tr=RING/FYVE/PHD zinc finger-containing protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: ring fyve phd zinc finger-containing protein 3.99094e-19
Internal
sp_v2.0_unigene33832 SustainPine v2.0 464
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RLH2_RICCO 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 5.34338e-20
Putative C-terminus
sp_v2.0_unigene33834 SustainPine v2.0 479
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
N-terminus
sp_v2.0_unigene33843 SustainPine v2.0 1493
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001078119.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAF20226.1|AC012395_13 putative RING zinc finger protein [Arabidopsis thaliana] gb|AEE74513.1| RING/U-box domain 7.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene33863 SustainPine v2.0 596
• AutoFact: RHC1A n=2 Tax=Zea mays RepID=B6T839_MAIZE 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: e3 ubiquitin-protein ligase ring1-like isoform 1 1.02101e-40
C-terminus
sp_v2.0_unigene34098 SustainPine v2.0 658
• AutoFact: 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 3-hydroxyisobutyrate dehydrogenase 0.0
N-terminus
sp_v2.0_unigene34140 SustainPine v2.0 239
• AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9T6X0_RICCO 5.0e-05
• FL-Next: tr=RING finger protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v2.0_unigene34256 SustainPine v2.0 375
• AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RT88_RICCO 3.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ring finger 2.97961e-34
Putative C-terminus
sp_v2.0_unigene34258 SustainPine v2.0 279
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: ring u-box domain-containing protein 2.82164e-20
Internal
sp_v2.0_unigene34270 SustainPine v2.0 349
• AutoFact: putative E3 ubiquitin-protein ligase ORTHRUS 4 [Arabidopsis thaliana] sp|Q9C8E1.1|ORTH4_ARATH RecName: Full=Putative E3 ubiquitin-protein ligase ORTHRUS 4; AltName: Full=Protein VARIANT IN METHYLATION 4 gb|AAG51294.1|AC026480_1 RING zinc finger protein, p 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: e3 ubiquitin-protein ligase orthrus 2 4.91501e-21
N-terminus
sp_v2.0_unigene34566 SustainPine v2.0 1053
• AutoFact: RING-H2 finger protein ATL1M, putative n=1 Tax=Ricinus communis RepID=B9T6E5_RICCO 9.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ring-h2 finger protein atl3c 0.0
Putative Complete
sp_v2.0_unigene34598 SustainPine v2.0 479
• AutoFact: zinc ion binding protein [Arabidopsis thaliana] gb|AAL38845.1| putative SecA-type chloroplast protein transport factor [Arabidopsis thaliana] gb|AAM20152.1| putative SecA-type chloroplast transport factor protein [Arabidopsis thaliana] dbj|BAF01579.1| hyp 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: preprotein translocase seca family protein 0.0
N-terminus
sp_v2.0_unigene35017 SustainPine v2.0 655
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_973461.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAL11603.1|AF424609_1 unknown protein [Arabidopsis thaliana] gb|AAM15000.1| Expressed protein [Arabidopsis thaliana 2.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ring u-box domain-containing protein 4.63489e-38
N-terminus
sp_v2.0_unigene35088 SustainPine v2.0 540
• AutoFact: Unassigned protein
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain