Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: DNA ligase, ATP-dependent, conserved site

Term: IPR016059  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene27251 SustainPine v2.0 503
AutoFact: ethylene-responsive transcription factor ERF003 [Arabidopsis thaliana] sp|Q94AW5.1|ERF03_ARATH RecName: Full=Ethylene-responsive transcription factor ERF003 gb|AAK74017.1| AT5g25190/F21J6_103 [Arabidopsis thaliana] gb|AAL31157.1| AT5g25190/F21J6_103 [Arab 1.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ap2 erf domain-containing transcription factor 0.0
N-terminus
sp_v2.0_unigene27562 SustainPine v2.0 2032
AutoFact: Levopimaradiene synthase, chloroplastic n=2 Tax=Pinus RepID=TPSD1_PINTA 0.0
FL-Next: sp=Levopimaradiene synthase, chloroplastic; Pinus taeda (Loblolly pine). 0.0
Blast2go: a chain structure of a three-domain sesquiterpene synthase: a prospective target for advanced biofuels production 0.0
C-terminus
sp_v2.0_unigene28282 SustainPine v2.0 1818
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Putative Complete
sp_v2.0_unigene28627 SustainPine v2.0 1475
AutoFact: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana] dbj|BAD94510.1| hypothetical protein [Arabidopsis thaliana] gb|AEE29802.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis th 3.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histidine kinase- dna gyrase b- and hsp90-like atpase family protein 1.84971e-43
C-terminus
sp_v2.0_unigene28850 SustainPine v2.0 1182
AutoFact: Ethylene responsive element binding protein 1 n=1 Tax=Gossypium barbadense RepID=A3FMG9_GOSBA 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ethylene-responsive transcription factor 1a 0.0
Complete
sp_v2.0_unigene29621 SustainPine v2.0 1151
AutoFact: Ethylene-responsive transcription factor 1A n=1 Tax=Medicago truncatula RepID=A9P6A4_MEDTR 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ethylene-responsive transcription factor 1a 0.0
Putative Complete
sp_v2.0_unigene32095 SustainPine v2.0 520
AutoFact: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9NBC4_POPTR 4.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ap2 erf domain-containing transcription factor 3.38839e-24
Putative C-terminus
sp_v2.0_unigene32143 SustainPine v2.0 500
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: zinc finger 0.0
Putative N-terminus
sp_v2.0_unigene32451 SustainPine v2.0 1974
AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 7.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tetratricopeptide repeat domain-containing protein 0.0
Putative Complete
sp_v2.0_unigene33062 SustainPine v2.0 602
AutoFact: AP2 domain containing protein 1.0e-05
Coding
sp_v2.0_unigene34390 SustainPine v2.0 1513
AutoFact: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9H2N0_POPTR 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ap2 erf domain-containing transcription factor 1.60224e-21
C-terminus
sp_v2.0_unigene34791 SustainPine v2.0 718
AutoFact: pfam08755, YccV-like, Hemimethylated DNA-binding protein YccV like 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uvrb uvrc motif-containing protein 0.0
Internal
sp_v2.0_unigene35404 SustainPine v2.0 736
AutoFact: RecName: Full=Cyclin-T1-3; Short=CycT1;3 gb|AAX92940.1| Cyclin, N-terminal domain, putative [Oryza sativa Japonica Group] gb|EEC67709.1| hypothetical protein OsI_35185 [Oryza sativa Indica Group] 3.0e-13
FL-Next: sp=Cyclin-T1-4; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 1.29926e-21
N-terminus
sp_v2.0_unigene36822 SustainPine v2.0 642
AutoFact: Ethylene-responsive transcription factor RAP2-3 n=2 Tax=Arabidopsis RepID=RAP23_ARATH 8.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ap2 domain containing protein 3.38974e-42
N-terminus
sp_v2.0_unigene37228 SustainPine v2.0 569
AutoFact: DNA ligase n=1 Tax=Sorghum bicolor RepID=C5WXG6_SORBI 3.0e-12
FL-Next: sp=DNA ligase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna ligase 2.76907e-13
Putative N-terminus
sp_v2.0_unigene37980 SustainPine v2.0 730
AutoFact: Ethylene-responsive-element-binding factor 12 n=1 Tax=Petunia x hybrida RepID=E3VVS1_PETHY 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ethylene responsive element binding factor 2 1.52593e-34
Putative Complete
sp_v2.0_unigene38471 SustainPine v2.0 857
AutoFact: DNA helicase hus2, putative n=1 Tax=Ricinus communis RepID=B9RFH2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna helicase 0.0
Putative N-terminus
sp_v2.0_unigene39508 SustainPine v2.0 399
AutoFact: histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana] gb|AAW70385.1| At4g36280 [Arabidopsis thaliana] gb|AEE86643.1| histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene42413 SustainPine v2.0 342
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.69685e-18
Putative C-terminus
sp_v2.0_unigene43074 SustainPine v2.0 341
AutoFact: DNA ligase n=1 Tax=Populus trichocarpa RepID=B9IN68_POPTR 7.0e-26
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna ligase 5.58879e-30
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain