Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene10764 SustainPine v2.0 817
AutoFact: beta-adaptin-like protein A [Arabidopsis thaliana] sp|Q9LDK9.1|APBLA_ARATH RecName: Full=Beta-adaptin-like protein A; Short=At-bA-Ad; Short=At-betaA-Ad; AltName: Full=AP complex subunit beta-A; AltName: Full=Adaptor protein complex AP subunit beta-A; AltN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: beta-adaptin-like protein a 0.0
N-terminus
sp_v2.0_unigene10765 SustainPine v2.0 783
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R809_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing 0.0
Complete
sp_v2.0_unigene10781 SustainPine v2.0 1639
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RQZ0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene10807 SustainPine v2.0 870
AutoFact: glycine-rich RNA-binding protein [Physcomitrella patens] 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene10828 SustainPine v2.0 1114
AutoFact: MtN3_slv domain containing protein 6.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: bidirectional sugar transporter sweet5 0.0
Complete
sp_v2.0_unigene10971 SustainPine v2.0 924
AutoFact: Putative beta-1,3-glucan synthase n=1 Tax=Nicotiana alata RepID=Q93XQ3_NICAL 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: callose synthase 0.0
Complete
sp_v2.0_unigene10980 SustainPine v2.0 895
AutoFact: ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] gb|ABK28304.1| unknown [Arabidopsis thaliana] gb|AEE81971.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] 3.0e-21
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ubiquitin carboxyl-terminal hydrolase-like protein 1.24328e-24
C-terminus
sp_v2.0_unigene11007 SustainPine v2.0 1621
AutoFact: ATP-dependent peptidase, putative n=1 Tax=Ricinus communis RepID=B9RIL2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial-like 0.0
N-terminus
sp_v2.0_unigene11048 SustainPine v2.0 664
AutoFact: CBL-interacting protein kinase 19 n=3 Tax=Vitis vinifera RepID=C4P7W8_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cbl-interacting protein kinase 0.0
Internal
sp_v2.0_unigene11053 SustainPine v2.0 948
AutoFact: DUF296 domain containing protein 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-binding protein escarola-like 7.31837e-29
C-terminus
sp_v2.0_unigene11179 SustainPine v2.0 1668
AutoFact: E3 ubiquitin-protein ligase XBAT33 [Arabidopsis thaliana] sp|Q4FE45.1|XB33_ARATH RecName: Full=E3 ubiquitin-protein ligase XBAT33; AltName: Full=Ankyrin repeat domain and RING finger-containing protein XBAT33; AltName: Full=Protein XB3 homolog 3 gb|AAZ140 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: e3 ubiquitin-protein ligase xbat33-like 0.0
Putative Complete
sp_v2.0_unigene11218 SustainPine v2.0 1585
AutoFact: PLAC8 family protein [Arabidopsis thaliana] gb|AAU44540.1| hypothetical protein AT5G05350 [Arabidopsis thaliana] gb|AED90862.1| PLAC8 family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: plac8 family protein 0.0
Putative Complete
sp_v2.0_unigene11353 SustainPine v2.0 1128
AutoFact: GTP-binding protein alpha subunit, gna, putative n=1 Tax=Ricinus communis RepID=B9S8Q3_RICCO 0.0
FL-Next: sp=Guanine nucleotide-binding protein alpha-1 subunit; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Blast2go: gtp-binding protein alpha 0.0
N-terminus
sp_v2.0_unigene11375 SustainPine v2.0 1693
AutoFact: putative lysophosphatidic acid acyltransferase [Oryza sativa Japonica Group] gb|EAY79072.1| hypothetical protein OsI_34182 [Oryza sativa Indica Group] gb|EAZ16559.1| hypothetical protein OsJ_32032 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic; Brassica napus (Rape). 0.0
Blast2go: 1-acyl-sn-glycerol-3-phosphate acyltransferase chloroplastic-like 0.0
Complete
sp_v2.0_unigene11447 SustainPine v2.0 1187
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RAT8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein chloroplastic-like 0.0
Putative C-terminus
sp_v2.0_unigene11450 SustainPine v2.0 594
AutoFact: PPR_1 domain containing protein 3.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein at4g02750-like 0.0
Internal
sp_v2.0_unigene11454 SustainPine v2.0 700
AutoFact: Flavonoid 3-hydroxylase, putative n=1 Tax=Ricinus communis RepID=B9SBG5_RICCO 8.40779e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: flavonoid 3- 0.0
Putative N-terminus
sp_v2.0_unigene11485 SustainPine v2.0 788
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SNN7_RICCO 3.99931e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing 0.0
Putative N-terminus
sp_v2.0_unigene11527 SustainPine v2.0 1201
AutoFact: putative RNA helicase [Oryza sativa Japonica Group] dbj|BAD35820.1| putative RNA helicase [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atp-dependent rna helicase dhx8 0.0
Internal
sp_v2.0_unigene11587 SustainPine v2.0 1210
AutoFact: H-ATPase [Oryza sativa Japonica Group] prf||1906387A H ATPase 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: plasma membrane h+ atpase 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain