Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene2401 SustainPine v2.0 2539
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
Putative Complete
sp_v2.0_unigene2420 SustainPine v2.0 1985
AutoFact: Alpha-amylase n=2 Tax=Hordeum vulgare subsp. vulgare RepID=C3W8N1_HORVD 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: alpha-amylase-like 2 0.0
Complete
sp_v2.0_unigene2464 SustainPine v2.0 867
AutoFact: putative mitotic arrest defective protein 2B [Oryza sativa Japonica Group] gb|EEE55135.1| hypothetical protein OsJ_02922 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mitotic spindle assembly checkpoint protein mad2b 0.0
Complete
sp_v2.0_unigene2561 SustainPine v2.0 1795
AutoFact: ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] gb|ABK28304.1| unknown [Arabidopsis thaliana] gb|AEE81971.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ubiquitin carboxyl-terminal hydrolase-like protein 0.0
C-terminus
sp_v2.0_unigene2579 SustainPine v2.0 2113
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400 gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana] gb|AEE34095.1| pentatricopeptide repea 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Putative C-terminus
sp_v2.0_unigene2618 SustainPine v2.0 1013
AutoFact: kinesin-like protein KIF18A [Danio rerio] gb|AAH47799.1| Zgc:55995 [Danio rerio] gb|AAI63966.1| Zgc:55995 protein [Danio rerio] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromosome-associated kinesin 0.0
N-terminus
sp_v2.0_unigene2694 SustainPine v2.0 972
AutoFact: bHLH transcription factor, putative [Brassica oleracea] 6.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 9.75086e-34
Internal
sp_v2.0_unigene2743 SustainPine v2.0 1591
AutoFact: Unassigned protein
FL-Next: sp=U-box domain-containing protein 43; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene2801 SustainPine v2.0 1182
AutoFact: Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9SJ92_RICCO 0.0
FL-Next: sp=Pentatricopeptide repeat-containing protein At2g32230, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pentatricopeptide repeat-containing protein mitochondrial-like 0.0
Internal
sp_v2.0_unigene2805 SustainPine v2.0 929
AutoFact: carbohydrate-binding domain-containing protein [Arabidopsis thaliana] gb|AAL15255.1| AT5g01260/F7J8_240 [Arabidopsis thaliana] gb|AAN28796.1| At5g01260/F7J8_240 [Arabidopsis thaliana] gb|AED90319.1| carbohydrate-binding domain-containing protein [Arabidop 8.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: carbohydrate-binding domain-containing protein 4.37851e-32
Putative N-terminus
sp_v2.0_unigene2808 SustainPine v2.0 1460
AutoFact: No apical meristem-like protein (Fragment) n=1 Tax=Picea sitchensis RepID=E0ZFA1_PICSI 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: no apical meristem-like protein 0.0
Complete
sp_v2.0_unigene2834 SustainPine v2.0 2243
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Complete
sp_v2.0_unigene2854 SustainPine v2.0 1237
AutoFact: DsRNA-binding protein LH1 n=11 Tax=Brassica RepID=Q5IZK8_BRAOC 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dsrna-binding protein 7.48388e-35
Complete
sp_v2.0_unigene2919 SustainPine v2.0 1792
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
sp_v2.0_unigene2928 SustainPine v2.0 1977
AutoFact: 1,3-beta-glucan synthase, putative n=1 Tax=Ricinus communis RepID=B9SQ54_RICCO 0.0
FL-Next: sp=Callose synthase 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: callose synthase 0.0
Internal
sp_v2.0_unigene2932 SustainPine v2.0 1085
AutoFact: Unassigned protein
FL-Next: sp=Pentatricopeptide repeat-containing protein At1g62350; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Complete
sp_v2.0_unigene2958 SustainPine v2.0 1012
AutoFact: pentatricopeptide (PPR) repeat-containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing 0.0
C-terminus
sp_v2.0_unigene2983 SustainPine v2.0 2220
AutoFact: NAC domain-containing protein 8 [Arabidopsis thaliana] sp|Q6NQK2.1|NAC8_ARATH RecName: Full=NAC domain-containing protein 8; Short=ANAC008 gb|AAQ62870.1| At1g25580 [Arabidopsis thaliana] dbj|BAD93935.1| hypothetical protein [Arabidopsis thaliana] dbj|BAF0 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nac domain-containing protein 8-like 0.0
Complete
sp_v2.0_unigene3099 SustainPine v2.0 3374
AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] gb|AED97923.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: aaa-type atpase family protein 0.0
Complete
sp_v2.0_unigene3130 SustainPine v2.0 2294
AutoFact: CBL-interacting protein kinase 3 n=8 Tax=rosids RepID=A0MNJ1_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cbl-interacting serine threonine-protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain