Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene1394 SustainPine v2.0 2164
AutoFact: dgd1 suppressor 1 [Arabidopsis thaliana] gb|AAO00810.1| putative protein [Arabidopsis thaliana] gb|AAP37724.1| At5g12290 [Arabidopsis thaliana] gb|AED91788.1| dgd1 suppressor 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: nuclear control of atpase protein 0.0
Complete
sp_v2.0_unigene1414 SustainPine v2.0 1949
AutoFact: putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] gb|EEE56247.1| hypothetical protein OsJ_05263 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
C-terminus
sp_v2.0_unigene1462 SustainPine v2.0 876
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q84JR3.1|PP334_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21705, mitochondrial; Flags: Precursor gb|AAO42004.1| unknown protein [Arabidopsis thaliana] gb|AAO505 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing 0.0
Putative N-terminus
sp_v2.0_unigene1571 SustainPine v2.0 2603
AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna-splicing factor atp-dependent rna helicase 0.0
Putative N-terminus
sp_v2.0_unigene1577 SustainPine v2.0 1808
AutoFact: Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein [Arabidopsis thaliana] emb|CAB38305.1| ribosomal-like protein [Arabidopsis thaliana] emb|CAB80431.1| ribosomal-like protein [Arabidopsis thaliana] gb|AAL67122.1| AT4g37660/F19F18_150 [Arabi 7.0e-32
FL-Next: sp=50S ribosomal protein L12, chloroplastic; Porphyra yezoensis. Plastid; Chloroplast. 0.0
Blast2go: 50s ribosomal protein l7 l12-like 1.4013e-45
Complete
sp_v2.0_unigene1692 SustainPine v2.0 2465
AutoFact: XLG1, extra-large G protein n=2 Tax=Selaginella moellendorffii RepID=D8QZS9_SELML 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: extra-large g protein 0.0
Complete
sp_v2.0_unigene1734 SustainPine v2.0 2020
AutoFact: proteinaceous RNase P 1 [Arabidopsis thaliana] sp|Q66GI4.1|PP179_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32230, mitochondrial; Flags: Precursor gb|AAU05541.1| At2g32230 [Arabidopsis thaliana] gb|AEC08652.1| proteinaceous RNase 0.0
FL-Next: sp=Pentatricopeptide repeat-containing protein At2g32230, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
C-terminus
sp_v2.0_unigene1758 SustainPine v2.0 1593
AutoFact: putative callose synthase 1 catalytic subunit [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transferring glycosyl 0.0
Complete
sp_v2.0_unigene1761 SustainPine v2.0 2279
AutoFact: DNA-binding protein [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Complete
sp_v2.0_unigene1767 SustainPine v2.0 939
AutoFact: GTP-binding protein alpha subunit, gna, putative n=1 Tax=Ricinus communis RepID=B9T5D0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gtp-binding protein alpha 0.0
Complete
sp_v2.0_unigene1779 SustainPine v2.0 890
AutoFact: origin recognition complex subunit 4 [Zea mays] gb|AAL10455.1|AF417484_1 origin recognition complex subunit 4 [Zea mays] 1.99965e-42
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: origin recognition complex subunit 4 0.0
Putative C-terminus
sp_v2.0_unigene1792 SustainPine v2.0 2770
AutoFact: regulatory associated protein of mTOR [Arabidopsis thaliana] sp|Q93YQ1.1|RTOR1_ARATH RecName: Full=Regulatory-associated protein of TOR 1; AltName: Full=Protein RAPTOR 1; AltName: Full=Protein RAPTOR 1B; Short=AtRaptor1b gb|AAL24320.1| Unknown protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: regulatory-associated protein of tor 1-like 0.0
Complete
sp_v2.0_unigene1844 SustainPine v2.0 1654
AutoFact: putative peptide transport protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: peptide transporter ptr3-a-like 0.0
Complete
sp_v2.0_unigene1864 SustainPine v2.0 2066
AutoFact: genomes uncoupled 1 protein [Arabidopsis thaliana] sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Flags: Precursor gb|AAD26479.1| unknown protein [Arabidopsis thaliana] gb|AEC08542.1| genomes un 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
C-terminus
sp_v2.0_unigene1875 SustainPine v2.0 2295
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9FME4.1|PP438_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g60960, mitochondrial; Flags: Precursor dbj|BAB10645.1| unnamed protein product [Arabidopsis thaliana] 0.0
FL-Next: sp=Pentatricopeptide repeat-containing protein At5g60960, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Complete
sp_v2.0_unigene1912 SustainPine v2.0 3067
AutoFact: Mitochondrial respiratory chain complexes assembly protein AFG3, putative (EC:3.6.4.3); K08956 AFG3 family protein [EC:3.4.24.-] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene2006 SustainPine v2.0 1775
AutoFact: Diacylglycerol kinase, alpha, putative n=1 Tax=Ricinus communis RepID=B9T0H8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: diacylglycerol kinase 0.0
Complete
sp_v2.0_unigene2041 SustainPine v2.0 1115
AutoFact: Bidirectional sugar transporter SWEET1b n=2 Tax=Oryza sativa RepID=SWT1B_ORYSJ 4.00001e-41
FL-Next: sp=Bidirectional sugar transporter SWEET1b; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: bidirectional sugar transporter sweet1-like 0.0
Complete
sp_v2.0_unigene2255 SustainPine v2.0 1361
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9STF9.1|PP266_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46870 emb|CAB51178.1| putative protein [Arabidopsis thaliana] dbj|BAC42475.1| unknown protein [Arabido 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Complete
sp_v2.0_unigene2390 SustainPine v2.0 1246
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T1C7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain