Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Reverse transcriptase

Term: IPR000477  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene72643 SustainPine v2.0 399
AutoFact: Putative retrotransposon polyprotein n=1 Tax=Ipomoea batatas RepID=Q5MG92_IPOBA 4.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein partial 8.25498e-25
Putative Complete
sp_v2.0_unigene73100 SustainPine v2.0 339
AutoFact: Putative retrotransposon protein, identical n=2 Tax=Solanum demissum RepID=Q6L3S2_SOLDE 2.0e-29
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 2.72557e-38
Putative N-terminus
sp_v2.0_unigene73151 SustainPine v2.0 397
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 1.0e-31
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 2.99034e-37
Putative N-terminus
sp_v2.0_unigene73233 SustainPine v2.0 218
AutoFact: polyprotein [Candida glabrata] 3.0e-18
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: gag-pol polyprotein 1.18877e-21
C-terminus
sp_v2.0_unigene73307 SustainPine v2.0 404
AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 6.0e-38
FL-Next: tr=Integrase; Silene latifolia (White campion) (Bladder campion). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
sp_v2.0_unigene73366 SustainPine v2.0 397
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 8.0e-26
FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
Blast2go: retrotransposon unclassified 1.53374e-25
Internal
sp_v2.0_unigene73381 SustainPine v2.0 326
AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD4_SILLA 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: gag-pol polyprotein 1.74756e-34
Internal
sp_v2.0_unigene73457 SustainPine v2.0 194
AutoFact: OSJNBa0085C10.29 protein n=1 Tax=Oryza sativa RepID=Q5JPW2_ORYSA 4.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 3.44207e-20
Putative Complete
sp_v2.0_unigene73546 SustainPine v2.0 371
AutoFact: Putative gag-pol polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6UUF6_ORYSJ 6.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 1.84971e-43
Complete
sp_v2.0_unigene73700 SustainPine v2.0 326
AutoFact: OSJNBb0049I21.5 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XRV6_ORYSJ 3.0e-22
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon ty3-gypsy subclass 4.15575e-22
Putative C-terminus
sp_v2.0_unigene73710 SustainPine v2.0 395
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa Japonica Group RepID=Q10FX2_ORYSJ 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 1.5685e-16
N-terminus
sp_v2.0_unigene73824 SustainPine v2.0 314
AutoFact: putative methyltransferase PMT17 [Arabidopsis thaliana] sp|Q9SZX8.1|PMTH_ARATH RecName: Full=Probable methyltransferase PMT17 emb|CAB40037.1| putative protein [Arabidopsis thaliana] emb|CAB78167.1| putative protein [Arabidopsis thaliana] gb|AEE82883.1| pu 8.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 8.25225e-42
Internal
sp_v2.0_unigene74019 SustainPine v2.0 422
AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 3.0e-32
FL-Next: tr=Integrase; subsp. trichocarpa). 0.0
Blast2go: gag protein 5.86802e-32
Internal
sp_v2.0_unigene74098 SustainPine v2.0 300
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: reverse transcriptase 3.44548e-13
Internal
sp_v2.0_unigene74177 SustainPine v2.0 390
AutoFact: OSIGBa0101K10.6 protein n=1 Tax=Oryza sativa RepID=Q01MA8_ORYSA 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 4.0216e-26
Putative Complete
sp_v2.0_unigene74223 SustainPine v2.0 436
AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 9.99967e-42
FL-Next: tr=Putative gag-pol polyprotein; Petunia hybrida (Petunia). 0.0
Blast2go: gag-pol polyprotein 0.0
Putative C-terminus
sp_v2.0_unigene74259 SustainPine v2.0 387
AutoFact: Putative non-LTR retroelement reverse transcriptase n=1 Tax=Arabidopsis thaliana RepID=O22220_ARATH 2.0e-22
FL-Next: sp=Uncharacterized mitochondrial protein AtMg01250; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: non-ltr retroelement reverse transcriptase 1.07434e-27
N-terminus
sp_v2.0_unigene74454 SustainPine v2.0 383
AutoFact: PsaD multi-domain protein 5.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100256388 7.49002e-21
C-terminus
sp_v2.0_unigene74589 SustainPine v2.0 207
AutoFact: Cinnamyl alcohol dehydrogenase, putative; 82967-79323 n=4 Tax=Arabidopsis RepID=Q9C8J3_ARATH 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rossmann-fold nad -binding domain-containing protein 8.09327e-25
Internal
sp_v2.0_unigene75463 SustainPine v2.0 349
AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 7.0e-26
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon unclassified 6.20541e-30
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain