Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Reverse transcriptase

Term: IPR000477  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene70934 SustainPine v2.0 359
• AutoFact: Putative polyprotein (Fragment) n=1 Tax=Cicer arietinum RepID=Q949K9_CICAR 3.0e-19
• FL-Next: tr=Putative polyprotein; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: polyprotein 5.68225e-19
Internal
sp_v2.0_unigene70959 SustainPine v2.0 279
• AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Ginkgo biloba RepID=Q9ARL0_GINBI 8.0e-16
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: pol protein integrase region 7.74644e-22
Internal
sp_v2.0_unigene71084 SustainPine v2.0 262
• AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 7.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: af378049_1reverse transcriptase 1.08763e-30
Putative Complete
sp_v2.0_unigene71217 SustainPine v2.0 405
• AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 1.0e-27
• FL-Next: tr=Retrotransposon gag protein; Asparagus officinalis (Garden asparagus). 0.0
• Blast2go: retrotransposon gag protein 2.8911e-27
Internal
sp_v2.0_unigene71254 SustainPine v2.0 357
• AutoFact: Unassigned protein
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: retrotransposon like protein 0.0
C-terminus
sp_v2.0_unigene71345 SustainPine v2.0 470
• AutoFact: NXRV093_D07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV093_D07 5' similar to Arabidopsis thaliana sequence At2g06320 putative retroelement pol polyprotein see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence. 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: uncharacterized protein loc100854167 1.55713e-36
Internal
sp_v2.0_unigene71429 SustainPine v2.0 271
• AutoFact: RVT_1 domain containing protein 3.0e-10
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: reverse transcriptase 8.96781e-34
Putative N-terminus
sp_v2.0_unigene71475 SustainPine v2.0 394
• AutoFact: OSIGBa0093M15.5 protein n=1 Tax=Oryza sativa RepID=Q01MK0_ORYSA 1.0e-25
• FL-Next: tr=OSIGBa0093M15.5 protein; Oryza sativa (Rice). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 2.01081e-29
Internal
sp_v2.0_unigene71520 SustainPine v2.0 512
• AutoFact: Unassigned protein
• FL-Next: tr=RanGAP1 interacting protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: kelch repeat-containing protein 1.79093e-12
C-terminus
sp_v2.0_unigene71852 SustainPine v2.0 350
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus elliottii RepID=O65863_PINEL 5.0e-30
• FL-Next: tr=Putative uncharacterized protein; Beta vulgaris subsp. vulgaris. 0.0
• Blast2go: reverse transcriptase 9.06569e-30
Internal
sp_v2.0_unigene71882 SustainPine v2.0 359
• AutoFact: Cinnamoyl-CoA reductase n=1 Tax=Codonopsis lanceolata RepID=Q2WFL1_9ASTR 8.0e-19
• FL-Next: tr=Cinnamoyl-CoA reductase; Pinus taeda (Loblolly pine). 0.0
• Blast2go: cinnamoyl reductase 1.07299e-36
Putative N-terminus
sp_v2.0_unigene71989 SustainPine v2.0 333
• AutoFact: Unassigned protein
• FL-Next: tr=H0515C11.8 protein; Oryza sativa (Rice). 0.0
• Blast2go: retrotransposon unclassified 6.42801e-12
Putative C-terminus
sp_v2.0_unigene72040 SustainPine v2.0 304
• AutoFact: Putative reverse-transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9T0B7_ARATH 4.0e-16
• FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
• Blast2go: pol polyprotein 5.31977e-20
Putative N-terminus
sp_v2.0_unigene72230 SustainPine v2.0 303
• AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVQ8_9POAL 4.0e-18
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 3.48472e-21
N-terminus
sp_v2.0_unigene72240 SustainPine v2.0 380
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 9.19217e-25
C-terminus
sp_v2.0_unigene72394 SustainPine v2.0 419
• AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 4.0e-25
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Blast2go: retrotransposon unclassified 7.22843e-25
Putative C-terminus
sp_v2.0_unigene72401 SustainPine v2.0 366
• AutoFact: Putative retrotransposon protein, identical n=2 Tax=Solanum demissum RepID=Q6L3S2_SOLDE 5.0e-24
• FL-Next: tr=Putative uncharacterized protein orf215; Nicotiana tabacum (Common tobacco). Mitochondrion. 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 1.01887e-28
Internal
sp_v2.0_unigene72627 SustainPine v2.0 262
• AutoFact: Polyprotein n=1 Tax=Zea mays RepID=A5JSC4_MAIZE 8.0e-18
• FL-Next: tr=Putative polyprotein; Oryza sativa (Rice). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 5.79546e-19
Internal
sp_v2.0_unigene72636 SustainPine v2.0 247
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein n=1 Tax=Medicago truncatula RepID=Q2HW87_MEDTR 3.0e-07
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retrotransposon ty3-gypsy subclass 1.61936e-10
Internal
sp_v2.0_unigene72641 SustainPine v2.0 280
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q5W683_ORYSJ 1.0e-16
• FL-Next: tr=Putative polyprotein; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: uncharacterized protein loc100799454 4.2067e-21
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain