Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene32775 SustainPine v2.0 486
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QVH8_ORYSJ 3.0e-39
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00750; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Blast2go: retrotransposon unclassified 2.8026e-45
Putative C-terminus
sp_v2.0_unigene32792 SustainPine v2.0 268
• AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 1.0e-23
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Blast2go: retrotransposon unclassified 3.33279e-29
Putative N-terminus
sp_v2.0_unigene32840 SustainPine v2.0 523
• AutoFact: Leucine Rich Repeat family protein [Oryza sativa Japonica Group] 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 7.54144e-37
Internal
sp_v2.0_unigene32854 SustainPine v2.0 1940
• AutoFact: [K] COG5224 CCAAT-binding factor, subunit B 7.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nuclear transcription factor y subunit a- 0.0
C-terminus
sp_v2.0_unigene32949 SustainPine v2.0 438
• AutoFact: RVT_2 domain containing protein 3.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: hypothetical protein VITISV_027864 [Vitis vinifera] 1.65073e-42
Putative C-terminus
sp_v2.0_unigene32963 SustainPine v2.0 524
• AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 7.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: copia-type polyprotein 1.56664e-37
Putative C-terminus
sp_v2.0_unigene32982 SustainPine v2.0 811
• AutoFact: Gag and Pol n=1 Tax=Zea mays RepID=Q8LSK0_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 0.0
N-terminus
sp_v2.0_unigene33003 SustainPine v2.0 613
• AutoFact: LRR receptor-like serine/threonine-protein kinase EFR [Arabidopsis thaliana] sp|C0LGT6.1|EFR_ARATH RecName: Full=LRR receptor-like serine/threonine-protein kinase EFR; AltName: Full=Elongation factor Tu receptor; Short=EF-Tu receptor; Flags: Precursor gb| 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 3.85796e-40
N-terminus
sp_v2.0_unigene33056 SustainPine v2.0 316
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB 8.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: reverse transcriptase 1.72695e-36
Internal
sp_v2.0_unigene33606 SustainPine v2.0 615
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZS5_ORYSJ 8.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 6.56886e-34
Complete
sp_v2.0_unigene33857 SustainPine v2.0 976
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 0.0
N-terminus
sp_v2.0_unigene33889 SustainPine v2.0 361
• AutoFact: rve domain containing protein 9.0e-11
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: pol protein integrase region 1.60599e-28
Internal
sp_v2.0_unigene33945 SustainPine v2.0 1125
• AutoFact: rve domain containing protein 3.0e-26
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00750; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Blast2go: hypothetical protein VITISV_040269 [Vitis vinifera] 0.0
Complete
sp_v2.0_unigene33994 SustainPine v2.0 912
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retrotransposon protein 0.0
Internal
sp_v2.0_unigene34842 SustainPine v2.0 1004
• AutoFact: WS0336.C21_F15 WS-SE-N-A-18 Picea glauca cDNA clone WS0336_F15 3, mRNA sequence. 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 0.0
Putative C-terminus
sp_v2.0_unigene35082 SustainPine v2.0 622
• AutoFact: Cationic amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9SKU6_RICCO 0.0
• FL-Next: tr=Cationic amino acid transporter, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: high affinity cationic amino acid transporter 0.0
Internal
sp_v2.0_unigene35179 SustainPine v2.0 826
• AutoFact: RVT_1 domain containing protein 3.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ac051624_3 retroelement 0.0
Putative Complete
sp_v2.0_unigene35688 SustainPine v2.0 436
• AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCB7_POPTR 7.0e-29
• FL-Next: tr=Integrase; subsp. trichocarpa). 0.0
• Blast2go: integrase [Populus trichocarpa] 6.03032e-33
Internal
sp_v2.0_unigene35729 SustainPine v2.0 697
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q10NE5_ORYSJ 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: retrotransposon unclassified 0.0
Putative C-terminus
sp_v2.0_unigene35936 SustainPine v2.0 525
• AutoFact: putative protein kinase Xa21, receptor type precursor [Oryza sativa Japonica Group] dbj|BAD33650.1| putative protein kinase Xa21, receptor type precursor [Oryza sativa Japonica Group] gb|EAZ44777.1| hypothetical protein OsJ_29408 [Oryza sativa Japonica Gr 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable lrr receptor-like serine threonine-protein kinase at3g47570-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain