Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene11292 SustainPine v2.0 1883
AutoFact: putative CCAAT-binding transcription factor [Oryza sativa Japonica Group] 9.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear transcription factor y subunit a-9-like 0.0
Complete
sp_v2.0_unigene11615 SustainPine v2.0 3706
AutoFact: Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9T173_RICCO 0.0
FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: receptor-like protein kinase 0.0
Complete
sp_v2.0_unigene11960 SustainPine v2.0 1929
AutoFact: Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9REC4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine kinase 0.0
Putative C-terminus
sp_v2.0_unigene12198 SustainPine v2.0 509
AutoFact: PREDICTED: similar to pol polyprotein, partial n=1 Tax=Nasonia vitripennis RepID=UPI00015B4525 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lectin receptor kinase 2.79972e-26
N-terminus
sp_v2.0_unigene12459 SustainPine v2.0 323
AutoFact: Lysyl-tRNA synthetase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D1I7_LACBS 2.0e-24
FL-Next: sp=Lysyl-tRNA synthetase; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: lysyl-trna synthetase 2.35533e-31
C-terminus
sp_v2.0_unigene12616 SustainPine v2.0 643
AutoFact: serine/threonine-protein kinase Nek5 [Arabidopsis thaliana] sp|Q0WPH8.1|NEK5_ARATH RecName: Full=Serine/threonine-protein kinase Nek5; AltName: Full=NimA-related protein kinase 5; Short=AtNEK6; Short=AtNek5 dbj|BAF00971.1| protein kinase like protein [Ara 4.0e-28
FL-Next: sp=Serine/threonine-protein kinase Nek5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: serine threonine-protein kinase nek5-like 1.28603e-34
N-terminus
sp_v2.0_unigene12776 SustainPine v2.0 576
AutoFact: Carbonic anhydrase, chloroplastic n=2 Tax=Triticeae RepID=CAHC_HORVU 3.00004e-41
FL-Next: sp=Carbonic anhydrase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: carbonic anhydrase 0.0
C-terminus
sp_v2.0_unigene13200 SustainPine v2.0 618
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 3.0e-30
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 5.32025e-30
Putative Complete
sp_v2.0_unigene13315 SustainPine v2.0 486
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 1.56398e-40
Internal
sp_v2.0_unigene13340 SustainPine v2.0 293
AutoFact: Reverse transcriptase (Fragment) n=2 Tax=Peperomia caperata RepID=Q56GE9_PEPCA 3.0e-32
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 3.62936e-43
Putative N-terminus
sp_v2.0_unigene13572 SustainPine v2.0 412
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 3.0e-22
FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
Blast2go: retrotransposon unclassified 3.07513e-22
Internal
sp_v2.0_unigene14089 SustainPine v2.0 1115
AutoFact: Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9T173_RICCO 0.0
FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: receptor-like protein kinase 0.0
N-terminus
sp_v2.0_unigene14108 SustainPine v2.0 904
AutoFact: Cytochrome P450 78A4 n=1 Tax=Pinus radiata RepID=C78A4_PINRA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cytochrome p450 0.0
C-terminus
sp_v2.0_unigene14166 SustainPine v2.0 1075
AutoFact: Pleiotropic drug resistance protein n=1 Tax=Cucumis sativus RepID=C8CA12_CUCSA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-binding cassette 0.0
Putative Complete
sp_v2.0_unigene14567 SustainPine v2.0 1172
AutoFact: HAT family dimerization domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4KHA1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hat family dimerization domain-containing protein 0.0
Complete
sp_v2.0_unigene14599 SustainPine v2.0 665
AutoFact: RecName: Full=Cytochrome P450 704C1; AltName: Full=Cytochrome P450 CYPD gb|AAX07434.1| cytochrome P450 CYPD [Pinus taeda] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cytochrome p450 0.0
Internal
sp_v2.0_unigene14917 SustainPine v2.0 777
AutoFact: Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH 2.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hat family dimerisation domain containing protein 1.69322e-26
Putative C-terminus
sp_v2.0_unigene15123 SustainPine v2.0 907
AutoFact: HAT family dimerisation domain containing protein n=2 Tax=Oryza sativa RepID=Q2R1C3_ORYSJ 0.0
FL-Next: tr=HAT family dimerisation domain containing protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: uncharacterized protein loc100780312 0.0
Internal
sp_v2.0_unigene15256 SustainPine v2.0 748
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QTQ7_ORYSJ 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
N-terminus
sp_v2.0_unigene16150 SustainPine v2.0 1771
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain