Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene81928 SustainPine v2.0 609
• AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Blast2go: reverse transcriptase 0.0
Complete
sp_v2.0_unigene81945 SustainPine v2.0 184
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Cycas revoluta RepID=Q56GG4_CYCRE 7.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: reverse transcriptase 1.25143e-30
C-terminus
sp_v2.0_unigene82167 SustainPine v2.0 395
• AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: gag-pol polyprotein 0.0
Internal
sp_v2.0_unigene82524 SustainPine v2.0 1580
• AutoFact: Pleiotropic drug resistance protein 3 n=4 Tax=Oryza sativa RepID=PDR3_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pdr-like abc transporter 0.0
Putative Complete
sp_v2.0_unigene82577 SustainPine v2.0 693
• AutoFact: PDR-like ABC transporter n=3 Tax=Oryza sativa Japonica Group RepID=Q8GU84_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: atp-binding cassette 0.0
Putative C-terminus
sp_v2.0_unigene82728 SustainPine v2.0 393
• AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 5.00264e-43
• FL-Next: tr=Polyprotein; Glycine max (Soybean) (Glycine hispida). 0.0
• Blast2go: pol protein integrase region 0.0
Internal
sp_v2.0_unigene83352 SustainPine v2.0 479
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 5.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 2.27595e-36
Internal
sp_v2.0_unigene83354 SustainPine v2.0 538
• AutoFact: Gag-pol polyprotein, putative [Solanum demissum] 4.99997e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: copia-type polyprotein 0.0
Putative C-terminus
sp_v2.0_unigene83363 SustainPine v2.0 388
• AutoFact: RVT_2 domain containing protein 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: uncharacterized protein loc100795634 9.50741e-34
Internal
sp_v2.0_unigene83368 SustainPine v2.0 259
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q4JQ43_GINBI 3.0e-20
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: reverse transcriptase 1.63176e-26
Internal
sp_v2.0_unigene83376 SustainPine v2.0 731
• AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: pol protein integrase region 0.0
Internal
sp_v2.0_unigene83380 SustainPine v2.0 321
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Cycas revoluta RepID=Q4JQ46_CYCRE 3.0e-24
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: reverse transcriptase 1.49367e-26
Internal
sp_v2.0_unigene83477 SustainPine v2.0 416
• AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 1.0e-34
• FL-Next: tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: pol protein integrase region 1.04593e-34
Internal
sp_v2.0_unigene83518 SustainPine v2.0 988
• AutoFact: Chromo domain containing protein 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retroelement pol polyprotein 1.1586e-36
C-terminus
sp_v2.0_unigene83563 SustainPine v2.0 967
• AutoFact: Chromo domain containing protein 0.0001
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retrotransposon unclassified 0.0
C-terminus
sp_v2.0_unigene83568 SustainPine v2.0 448
• AutoFact: gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana] 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: pol protein integrase region 5.04168e-38
Internal
sp_v2.0_unigene83571 SustainPine v2.0 423
• AutoFact: Retrotransposon protein, putative, unclassified n=5 Tax=Oryza sativa RepID=Q2QQD0_ORYSJ 9.0e-20
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retrotransposon unclassified 7.93108e-20
Internal
sp_v2.0_unigene83584 SustainPine v2.0 684
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 7.0e-21
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: ac069473_8gypsy ty-3 retroelement polyprotein 69905-74404 1.55313e-21
Internal
sp_v2.0_unigene83591 SustainPine v2.0 374
• AutoFact: Retrotransposon protein, putative, unclassified n=5 Tax=Oryza sativa RepID=Q2QQD0_ORYSJ 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retrotransposon unclassified 1.88373e-28
Internal
sp_v2.0_unigene83603 SustainPine v2.0 596
• AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: pol protein integrase region 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain