Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Rubredoxin-type fold

Term: IPR004039  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene2135 SustainPine v2.0 2243
• AutoFact: putative chromodomain-helicase-DNA-binding protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
C-terminus
sp_v2.0_unigene4446 SustainPine v2.0 1240
• AutoFact: rubredoxin family protein [Arabidopsis thaliana] dbj|BAB10504.1| unnamed protein product [Arabidopsis thaliana] gb|AAK59624.1| unknown protein [Arabidopsis thaliana] gb|AAN41384.1| unknown protein [Arabidopsis thaliana] gb|AED92391.1| rubredoxin family pr 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene5247 SustainPine v2.0 569
• AutoFact: CHD3-type chromatin-remodeling factor PICKLE [Arabidopsis thaliana] sp|Q9S775.1|PKL_ARATH RecName: Full=CHD3-type chromatin-remodeling factor PICKLE; AltName: Full=Protein GYMNOS gb|AAF07084.1|AF185578_1 GYMNOS/PICKLE [Arabidopsis thaliana] gb|AAF13875.1| 0.0
• FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
Internal
sp_v2.0_unigene7563 SustainPine v2.0 1306
• AutoFact: Putative rubredoxin n=1 Tax=Musa acuminata RepID=Q0GBX1_MUSAC 9.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene8720 SustainPine v2.0 931
• AutoFact: ATPase splayed [Arabidopsis thaliana] gb|AEC08101.1| ATPase splayed [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: atpase splayed 0.0
Putative N-terminus
sp_v2.0_unigene8865 SustainPine v2.0 722
• AutoFact: SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TTS1_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: chromodomain-helicase-dna-binding protein 2-like 0.0
Putative N-terminus
sp_v2.0_unigene12542 SustainPine v2.0 637
• AutoFact: SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U2Y8_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: swr1 complex snf2 family dna-dependent atpase 0.0
Putative C-terminus
sp_v2.0_unigene28282 SustainPine v2.0 1818
• AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
Putative Complete
sp_v2.0_unigene37941 SustainPine v2.0 361
• AutoFact: SNF2 family DNA-dependent ATPase (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TI22_PHYPA 5.0e-34
• FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: snf2 family dna-dependent atpase 1.11363e-33
Internal
sp_v2.0_unigene38083 SustainPine v2.0 491
• AutoFact: Transcription-coupled repair protein CSB/RAD26 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SCT4_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna repair and recombination protein 0.0
Internal
sp_v2.0_unigene39756 SustainPine v2.0 519
• AutoFact: CHD3-type chromatin-remodeling factor PICKLE [Arabidopsis thaliana] sp|Q9S775.1|PKL_ARATH RecName: Full=CHD3-type chromatin-remodeling factor PICKLE; AltName: Full=Protein GYMNOS gb|AAF07084.1|AF185578_1 GYMNOS/PICKLE [Arabidopsis thaliana] gb|AAF13875.1| 2.99878e-43
• FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
Internal
sp_v2.0_unigene46819 SustainPine v2.0 299
• AutoFact: CHD3-type chromatin-remodeling factor PICKLE n=2 Tax=Arabidopsis RepID=PKL_ARATH 6.99949e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
Internal
sp_v2.0_unigene57798 SustainPine v2.0 587
• AutoFact: chromodomain helicase DNA binding protein, putative (EC:2.7.11.1); K11643 chromodomain-helicase-DNA-binding protein 4 [EC:3.6.1.-] 0.0
• FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
Internal
sp_v2.0_unigene62015 SustainPine v2.0 433
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: unknown [Picea sitchensis] 5.88166e-32
N-terminus
sp_v2.0_unigene67509 SustainPine v2.0 470
• AutoFact: DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] sp|Q8RXS6.2|INO80_ARATH RecName: Full=DNA helicase INO80; Short=AtINO80; AltName: Full=Putative DNA helicase INO80 complex homolog 1 gb|AEE79637.1| DNA helicase INO80 complex-like 1 [Arabidopsis tha 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna helicase ino80 complex-like 1 0.0
Internal
sp_v2.0_unigene82109 SustainPine v2.0 379
• AutoFact: Ferredoxin--nitrite reductase, chloroplastic n=1 Tax=Betula pendula RepID=NIR_BETPN 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nitrite reductase 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain