Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Like-Sm ribonucleoprotein (LSM) domain

Term: IPR001163  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene1310 SustainPine v2.0 1253
AutoFact: PREDICTED: LSM11, U7 small nuclear RNA associated [Danio rerio] ref|XP_003199983.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Danio rerio] 9.0e-08
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene1716 SustainPine v2.0 1838
AutoFact: Vacuolar protein sorting factor 4B-like n=4 Tax=Poaceae RepID=Q5QMP6_ORYSJ 0.0
FL-Next: tr=Katanin p60 ATPase-containing subunit, putative; Ricinus communis (Castor bean). 0.0
Blast2go: katanin p60 atpase-containing subunit a-like 2-like 0.0
Complete
sp_v2.0_unigene2421 SustainPine v2.0 2165
AutoFact: Transitional endoplasmic reticulum ATPase-like n=3 Tax=Oryza sativa RepID=Q6YUV9_ORYSJ 0.0
FL-Next: tr=Similarity to unknown protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: p-loop containing ntpase domain-containing protein 0.0
Complete
sp_v2.0_unigene2596 SustainPine v2.0 1352
AutoFact: Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] gb|AEE84034.1| Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein-associated protein b 4.34403e-44
Complete
sp_v2.0_unigene2882 SustainPine v2.0 2823
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RIQ4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: p-loop containing nucleoside triphosphate hydrolase-like protein 0.0
Complete
sp_v2.0_unigene4211 SustainPine v2.0 1008
AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna mismatch repair protein 0.0
Complete
sp_v2.0_unigene5333 SustainPine v2.0 942
AutoFact: putative small nuclear ribonucleoprotein D1 [Brassica napus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein sm d1 0.0
Complete
sp_v2.0_unigene5917 SustainPine v2.0 901
AutoFact: U6 snRNA-associated Sm-like protein LSm8 [Arabidopsis thaliana] ref|NP_001031238.1| U6 snRNA-associated Sm-like protein LSm8 [Arabidopsis thaliana] gb|AAL50104.1| At1g65700/F1E22_3 [Arabidopsis thaliana] gb|AAM16215.1| At1g65700/F1E22_3 [Arabidopsis thali 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u6 snrna-associated sm-like protein lsm8 0.0
Complete
sp_v2.0_unigene7097 SustainPine v2.0 1282
AutoFact: small nuclear ribonucleoprotein, putative [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein sm d3 0.0
Complete
sp_v2.0_unigene7418 SustainPine v2.0 1909
AutoFact: BTB/POZ and M2 domain-containing protein [Arabidopsis thaliana] sp|Q9M8J9.1|BPM2_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 2; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 2; Short=AtBPM2 gb|AAF30312.1|AC018907_12 unknown protein [Ara 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: btb poz and math domain-containing protein 2-like 0.0
Complete
sp_v2.0_unigene8749 SustainPine v2.0 762
AutoFact: thiamin pyrophosphokinase1 [Arabidopsis thaliana] gb|AAL25560.1| At1g02880/F22D16_33 [Arabidopsis thaliana] gb|AAM26660.1| At1g02880/F22D16_33 [Arabidopsis thaliana] gb|AEE27488.1| thiamin pyrophosphokinase1 [Arabidopsis thaliana] 4.99997e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: thiamin pyrophosphokinase1 0.0
C-terminus
sp_v2.0_unigene9351 SustainPine v2.0 999
AutoFact: putative small nuclear ribonucleoprotein [Arabidopsis thaliana] ref|XP_002886267.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp. lyrata] gb|AAD08943.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana] gb|AAM64436.1| p 3.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein e 0.0
Complete
sp_v2.0_unigene9382 SustainPine v2.0 1133
AutoFact: Sm-like protein [Arabidopsis thaliana] 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene9625 SustainPine v2.0 1202
AutoFact: uroporphiryn-III C-methyltransferase [Medicago truncatula] 0.0
FL-Next: sp=Uroporphyrinogen-III C-methyltransferase; Cyanidium caldarium. Plastid; Chloroplast. 0.0
Blast2go: siroheme synthase-like 0.0
Complete
sp_v2.0_unigene10509 SustainPine v2.0 770
AutoFact: PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Monodelphis domestica] 6.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u7 small nuclear rna associated 0.0
Complete
sp_v2.0_unigene13204 SustainPine v2.0 1298
AutoFact: 1-deoxy-D-xylulose 5-phosphate synthase type II n=1 Tax=Picea abies RepID=A7LA02_PICAB 0.0
FL-Next: tr=1-deoxy-D-xylulose 5-phosphate synthase type II; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: probable 1-deoxy-d-xylulose-5-phosphate chloroplastic-like 0.0
N-terminus
sp_v2.0_unigene13504 SustainPine v2.0 773
AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 2.99878e-43
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: mismatch repair endonuclease pms2-like 2.10195e-44
N-terminus
sp_v2.0_unigene14485 SustainPine v2.0 820
AutoFact: [O] COG0464 ATPases of the AAA+ class 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: aaa-type atpase-like protein 0.0
N-terminus
sp_v2.0_unigene14703 SustainPine v2.0 805
AutoFact: ATPase [Cryptococcus neoformans var. neoformans JEC21] gb|AAW42236.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: related to pms1-dna mismatch repair protein 0.0
Putative Complete
sp_v2.0_unigene16123 SustainPine v2.0 943
AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein g 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain