Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene44 SustainPine v2.0 3071
AutoFact: putative replication licensing factor MCM4 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna replication licensing factor mcm4 0.0
Complete
sp_v2.0_unigene90 SustainPine v2.0 1668
AutoFact: Pectinesterase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SP30_VITVI 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene272 SustainPine v2.0 2713
AutoFact: Kinesin-related protein n=1 Tax=Gossypium hirsutum RepID=A4GU96_GOSHI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: kinesin-4-like 0.0
Complete
sp_v2.0_unigene335 SustainPine v2.0 2436
AutoFact: kinesin-related protein [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: kinesin heavy 0.0
C-terminus
sp_v2.0_unigene376 SustainPine v2.0 2662
AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
Complete
sp_v2.0_unigene604 SustainPine v2.0 1271
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein rrp5 homolog 0.0
C-terminus
sp_v2.0_unigene1002 SustainPine v2.0 3083
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
FL-Next: sp=Probable methionyl-tRNA synthetase; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: methionyl-trna synthetase 0.0
Complete
sp_v2.0_unigene1078 SustainPine v2.0 1786
AutoFact: S1 RNA-binding domain-containing protein [Arabidopsis thaliana] gb|AAK76665.1| putative heat shock factor protein hsf8 [Arabidopsis thaliana] gb|AAN71967.1| putative heat shock factor protein hsf8 [Arabidopsis thaliana] dbj|BAH30290.1| hypothetical protei 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s1 rna-binding domain-containing protein 0.0
Putative Complete
sp_v2.0_unigene1372 SustainPine v2.0 894
AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] dbj|BAB10462.1| unnamed protein product [Arabidopsis thaliana] gb|AED97786.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] 5.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: soss complex subunit b1 0.0
Complete
sp_v2.0_unigene1449 SustainPine v2.0 1355
AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AEC09877.1| OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding protein 0.0
Complete
sp_v2.0_unigene1571 SustainPine v2.0 2603
AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna-splicing factor atp-dependent rna helicase 0.0
Putative N-terminus
sp_v2.0_unigene1747 SustainPine v2.0 1706
AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 0.0
FL-Next: tr=Ribosomal protein S3; Picea smithiana. Mitochondrion. 0.0
Blast2go: ribosomal protein s3 0.0
C-terminus
sp_v2.0_unigene1748 SustainPine v2.0 1760
AutoFact: Pectinesterase n=1 Tax=Vitis vinifera RepID=A5BYJ7_VITVI 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene1816 SustainPine v2.0 870
AutoFact: E3 ubiquitin ligase n=1 Tax=Cimex lectularius RepID=D1FPM1_CIMLE 7.00649e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cchc-type zinc finger protein cg3800-like 0.0
C-terminus
sp_v2.0_unigene2018 SustainPine v2.0 1977
AutoFact: DNA ligase n=5 Tax=Poaceae RepID=Q7XD67_ORYSJ 0.0
FL-Next: sp=DNA ligase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna ligase 0.0
C-terminus
sp_v2.0_unigene2032 SustainPine v2.0 2462
AutoFact: asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb|AAD4 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: asparaginyl-trna cytoplasmic 1-like 0.0
Complete
sp_v2.0_unigene2047 SustainPine v2.0 1903
AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9RKG6_RICCO 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectinesterase 53-like 0.0
Putative Complete
sp_v2.0_unigene2401 SustainPine v2.0 2539
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
Putative Complete
sp_v2.0_unigene2515 SustainPine v2.0 1666
AutoFact: Kinesin heavy chain, putative n=1 Tax=Ricinus communis RepID=B9T5B8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: kinesin heavy 0.0
Putative C-terminus
sp_v2.0_unigene2629 SustainPine v2.0 1312
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 5.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 3.90336e-34
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain