Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene22076 SustainPine v2.0 1143
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s11 0.0
Complete
sp_v2.0_unigene22205 SustainPine v2.0 1490
• AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene23417 SustainPine v2.0 640
• AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] gb|AAS76692.1| At4g18590 [Arabidopsis thaliana] gb|AAS88756.1| At4g18590 [Arabidopsis thaliana] gb|AEE84064.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] 3.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pollen-specific protein like 0.0
Complete
sp_v2.0_unigene23538 SustainPine v2.0 679
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s11 0.0
N-terminus
sp_v2.0_unigene24034 SustainPine v2.0 1137
• AutoFact: Eukaryotic translation initiation factor 5A 4 n=1 Tax=Picea abies RepID=Q3ZDK5_PICAB 0.0
• FL-Next: tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: eukaryotic translation initiation factor 5a isoform iv 0.0
Complete
sp_v2.0_unigene24405 SustainPine v2.0 695
• AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 3.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s28 1.61768e-25
Complete
sp_v2.0_unigene24413 SustainPine v2.0 434
• AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 6.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s28 1.16746e-26
Complete
sp_v2.0_unigene24494 SustainPine v2.0 541
• AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 8.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s28 3.77198e-26
Complete
sp_v2.0_unigene24819 SustainPine v2.0 1078
• AutoFact: putative 30S ribosomal protein S1 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 30s ribosomal protein s1-like 0.0
C-terminus
sp_v2.0_unigene24871 SustainPine v2.0 587
• AutoFact: ribosomal protein S11 (probable start codon at bp 67) [Arabidopsis thaliana] 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s11 0.0
C-terminus
sp_v2.0_unigene25011 SustainPine v2.0 1228
• AutoFact: asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb|AAD4 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene25110 SustainPine v2.0 1188
• AutoFact: pfam00436, SSB, Single-strand binding protein family 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: single-strand binding protein 0.0
Complete
sp_v2.0_unigene25264 SustainPine v2.0 2900
• AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
• FL-Next: sp=Probable methionyl-tRNA synthetase; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: methionyl-trna synthetase 0.0
Complete
sp_v2.0_unigene25478 SustainPine v2.0 1807
• AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 0.0
Complete
sp_v2.0_unigene25846 SustainPine v2.0 870
• AutoFact: 30S ribosomal protein S17, putative n=1 Tax=Ricinus communis RepID=B9RQK5_RICCO 9.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 30s ribosomal protein s17 0.0
Complete
sp_v2.0_unigene26063 SustainPine v2.0 1747
• AutoFact: monodehydroascorbate reductase (NADH) [Arabidopsis thaliana] sp|Q9LK94.1|MDAR2_ARATH RecName: Full=Probable monodehydroascorbate reductase, cytoplasmic isoform 2; Short=MDAR 2 dbj|BAB02528.1| cytosolic monodehydroascorbate reductase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: monodehydroascorbate reductase 0.0
C-terminus
sp_v2.0_unigene26198 SustainPine v2.0 994
• AutoFact: elongation factor EF-P [Arabidopsis thaliana] gb|AAL36090.1| putative elongation factor P (EF-P) [Arabidopsis thaliana] gb|AAM51349.1| putative elongation factor P (EF-P) [Arabidopsis thaliana] gb|AAM64282.1| putative elongation factor P (EF-P) [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: elongation factor p 0.0
Complete
sp_v2.0_unigene26243 SustainPine v2.0 743
• AutoFact: elongation factor EF-P [Arabidopsis thaliana] gb|AAL36090.1| putative elongation factor P (EF-P) [Arabidopsis thaliana] gb|AAM51349.1| putative elongation factor P (EF-P) [Arabidopsis thaliana] gb|AAM64282.1| putative elongation factor P (EF-P) [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: elongation factor p 0.0
C-terminus
sp_v2.0_unigene26335 SustainPine v2.0 854
• AutoFact: Translation initiation factor n=4 Tax=Magnoliophyta RepID=B5M1Y2_RHEAU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene26505 SustainPine v2.0 907
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 8.0e-30
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: glycine-rich rna-binding protein 1.60522e-29
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain