Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene10964 SustainPine v2.0 1026
AutoFact: putative RNA helicase [Oryza sativa Japonica Group] 1.0e-32
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 1.19185e-40
N-terminus
sp_v2.0_unigene11256 SustainPine v2.0 1042
AutoFact: small subunit ribosomal protein S17 [Arabidopsis thaliana] gb|AAD43160.1|AC007504_15 Putative ribosomal protein [Arabidopsis thaliana] dbj|BAC42717.1| unknown protein [Arabidopsis thaliana] gb|AAO50680.1| putative 40S ribosomal protein S17 [Arabidopsis th 1.0e-33
FL-Next: sp=30S ribosomal protein S17, chloroplastic; Thalassiosira pseudonana (Marine diatom) (Cyclotella nana). Plastid; Chloroplast. 0.0
Blast2go: 30s ribosomal protein s17 2.8026e-45
Complete
sp_v2.0_unigene11283 SustainPine v2.0 753
AutoFact: pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pre-mrna-splicing factor atp-dependent rna helicase prp16-like 0.0
Internal
sp_v2.0_unigene11311 SustainPine v2.0 909
AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9RKG6_RICCO 4.0e-24
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectinesterase 53-like 3.2253e-27
C-terminus
sp_v2.0_unigene11342 SustainPine v2.0 716
AutoFact: Ribosomal protein L2 n=1 Tax=Cycas taitungensis RepID=B0BLF2_CYCTA 1.0e-18
FL-Next: sp=60S ribosomal protein L2, mitochondrial; Oryza sativa subsp. japonica (Rice). Mitochondrion. 0.0
Blast2go: ribosomal protein l2 1.73866e-20
Internal
sp_v2.0_unigene11439 SustainPine v2.0 1025
AutoFact: pfam00436, SSB, Single-strand binding protein family 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein osb3 0.0
N-terminus
sp_v2.0_unigene11527 SustainPine v2.0 1201
AutoFact: putative RNA helicase [Oryza sativa Japonica Group] dbj|BAD35820.1| putative RNA helicase [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atp-dependent rna helicase dhx8 0.0
Internal
sp_v2.0_unigene11678 SustainPine v2.0 461
AutoFact: FAP multi-domain protein 2.0e-18
Coding
sp_v2.0_unigene11772 SustainPine v2.0 1493
AutoFact: putative aspartate--tRNA ligase [Arabidopsis thaliana] emb|CAB80093.1| putative aspartate--tRNA ligase [Arabidopsis thaliana] 0.0
FL-Next: sp=Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: aspartyl-trna synthetase 0.0
C-terminus
sp_v2.0_unigene11996 SustainPine v2.0 390
AutoFact: Kinesin heavy chain, putative n=1 Tax=Ricinus communis RepID=B9SAW6_RICCO 5.0e-37
FL-Next: sp=Kinesin-4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: kinesin-4-like 2.50832e-43
Internal
sp_v2.0_unigene12107 SustainPine v2.0 724
AutoFact: MCM domain containing protein 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna replication licensing factor mcm9-like 2.47744e-30
Complete
sp_v2.0_unigene12189 SustainPine v2.0 733
AutoFact: Unassigned protein
FL-Next: tr=Minichromosome maintenance 8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna replication licensing factor mcm6 1.16932e-16
C-terminus
sp_v2.0_unigene12459 SustainPine v2.0 323
AutoFact: Lysyl-tRNA synthetase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D1I7_LACBS 2.0e-24
FL-Next: sp=Lysyl-tRNA synthetase; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: lysyl-trna synthetase 2.35533e-31
C-terminus
sp_v2.0_unigene13091 SustainPine v2.0 741
AutoFact: Pectinesterase n=1 Tax=Populus trichocarpa RepID=B9IHB0_POPTR 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectinesterase 8-like 0.0
Putative C-terminus
sp_v2.0_unigene13242 SustainPine v2.0 807
AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 1.0e-33
FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
Blast2go: ribosomal protein s3 8.04738e-41
Putative N-terminus
sp_v2.0_unigene13252 SustainPine v2.0 1188
AutoFact: Transcription elongation factor SPT6 n=1 Tax=Arabidopsis thaliana RepID=F4I9Y7_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: transcription elongation factor spt6 0.0
Internal
sp_v2.0_unigene13334 SustainPine v2.0 302
AutoFact: Polyribonucleotide phophorylase (Fragment) n=1 Tax=Spinacia oleracea RepID=Q41370_SPIOL 2.0e-30
FL-Next: tr=Putative uncharacterized protein Sb02g003900; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: polyribonucleotide nucleotidyltransferase 9.65427e-38
Internal
sp_v2.0_unigene13860 SustainPine v2.0 937
AutoFact: pectinesterase 11 [Arabidopsis thaliana] sp|Q9SIJ9.1|PME11_ARATH RecName: Full=Putative pectinesterase 11; Short=PE 11; AltName: Full=Pectin methylesterase 11; Short=AtPME11 gb|AAD23644.1| putative pectinesterase [Arabidopsis thaliana] gb|AEC07202.1| pect 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectinesterase 11 0.0
Putative N-terminus
sp_v2.0_unigene13921 SustainPine v2.0 1787
AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
Complete
sp_v2.0_unigene14557 SustainPine v2.0 1437
AutoFact: asparaginyl-tRNA synthetase [Arabidopsis thaliana] sp|O48593.3|SYNO_ARATH RecName: Full=Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial; AltName: Full=Asparagine--tRNA ligase; Short=AsnRS; Flags: Precursor gb|AAL84964.1| AT4g17300/dl4685w [Arabid 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain