Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene80680 SustainPine v2.0 377
AutoFact: ribosomal protein L2-like [Solanum tuberosum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l2 0.0
Putative N-terminus
sp_v2.0_unigene80773 SustainPine v2.0 210
AutoFact: Eukaryotic translation initiation factor 5A 2 n=3 Tax=Picea RepID=Q3ZDK4_PICAB 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 5a1 1.45004e-20
Putative C-terminus
sp_v2.0_unigene80971 SustainPine v2.0 558
AutoFact: Eukaryotic translation initiation factor 5A-1 n=47 Tax=Magnoliophyta RepID=IF5A1_MEDSA 7.00649e-45
FL-Next: sp=Eukaryotic translation initiation factor 5A-1; Medicago sativa (Alfalfa). 0.0
Blast2go: eukaryotic translation initiation factor 5a1 4.2039e-45
Complete
sp_v2.0_unigene81300 SustainPine v2.0 528
AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s11 0.0
N-terminus
sp_v2.0_unigene81339 SustainPine v2.0 765
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 5.0e-20
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: protein 2.64476e-24
Putative Complete
sp_v2.0_unigene81825 SustainPine v2.0 402
AutoFact: translation initiation factor eIF-3 subunit 6 [Arabidopsis thaliana] gb|AAG53613.1|AF285832_1 eukaryotic initiation factor 3E subunit [Arabidopsis thaliana] gb|AAK64017.1| putative translation initiation factor 3 [Arabidopsis thaliana] gb|AAL85088.1| puta 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.7196e-28
Internal
sp_v2.0_unigene82628 SustainPine v2.0 430
AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s28 1.08498e-26
Complete
sp_v2.0_unigene82756 SustainPine v2.0 496
AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s28 2.32801e-26
Complete
sp_v2.0_unigene83388 SustainPine v2.0 345
AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v2.0_unigene83608 SustainPine v2.0 472
AutoFact: Eukaryotic translation initiation factor 5A 4 n=1 Tax=Picea abies RepID=Q3ZDK5_PICAB 0.0
FL-Next: tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: eukaryotic translation initiation factor 5a isoform iv 0.0
N-terminus
sp_v2.0_unigene83610 SustainPine v2.0 517
AutoFact: Eukaryotic translation initiation factor 5A 4 n=1 Tax=Picea abies RepID=Q3ZDK5_PICAB 0.0
FL-Next: tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: initiation factor 0.0
Complete
sp_v2.0_unigene83763 SustainPine v2.0 887
AutoFact: Eukaryotic translation initiation factor 5A n=3 Tax=Picea RepID=Q3ZDK6_PICAB 0.0
FL-Next: tr=Eukaryotic translation initiation factor 5A; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: eukaryotic translation initiation factor 5a 0.0
Putative Complete
sp_v2.0_unigene83772 SustainPine v2.0 403
AutoFact: Eukaryotic translation initiation factor 5A n=3 Tax=Picea RepID=Q3ZDK6_PICAB 1.0e-32
FL-Next: tr=Eukaryotic translation initiation factor 5A; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: eukaryotic translation initiation factor 5a 1.37065e-34
Putative C-terminus
sp_v2.0_unigene84296 SustainPine v2.0 723
AutoFact: Suppressor of ty, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9SEX9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: transcription elongation factor spt6 0.0
Internal
sp_v2.0_unigene84941 SustainPine v2.0 581
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 1.0e-13
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: universal minicircle sequence binding protein 1.47095e-16
C-terminus
sp_v2.0_unigene84946 SustainPine v2.0 224
AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v2.0_unigene85290 SustainPine v2.0 838
AutoFact: Pectinesterase (Fragment) n=2 Tax=Picea RepID=A5X524_PICAB 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectinesterase family protein 0.0
Internal
sp_v2.0_unigene85896 SustainPine v2.0 389
AutoFact: Single-stranded DNA-binding protein, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9STF2_RICCO 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: single-stranded dna-binding protein 4.42924e-31
Putative C-terminus
sp_v2.0_unigene86387 SustainPine v2.0 802
AutoFact: Pectinesterase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9STS3_PHYPA 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene91696 SustainPine v2.0 1582
AutoFact: Kinesin-like protein heavy chain n=3 Tax=Arabidopsis RepID=Q8W1Y3_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: kinesin-like protein 1 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain