Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene69398 SustainPine v2.0 311
AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s11 9.98429e-34
Putative N-terminus
sp_v2.0_unigene70227 SustainPine v2.0 536
AutoFact: ribosomal protein L2-like [Solanum tuberosum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l2 0.0
N-terminus
sp_v2.0_unigene74362 SustainPine v2.0 267
AutoFact: LRR_4 domain containing protein 2.0e-05
unknown
sp_v2.0_unigene75932 SustainPine v2.0 380
AutoFact: Putative elongation factor P (EF-P); 66839-65711 n=1 Tax=Arabidopsis thaliana RepID=Q9C9Y5_ARATH 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: elongation factor p 1.36316e-38
Internal
sp_v2.0_unigene76917 SustainPine v2.0 754
AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 3.00018e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene77030 SustainPine v2.0 619
AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.8259e-30
Putative Complete
sp_v2.0_unigene78558 SustainPine v2.0 464
AutoFact: Eukaryotic translation initiation factor 5A 2 n=3 Tax=Picea RepID=Q3ZDK4_PICAB 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 5a1 0.0
N-terminus
sp_v2.0_unigene78569 SustainPine v2.0 651
AutoFact: Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NLJ2_PICSI 0.0
FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: proteasome subunit beta type-6 0.0
C-terminus
sp_v2.0_unigene78620 SustainPine v2.0 852
AutoFact: Methionyl-tRNA synthetase-like protein n=2 Tax=Oryza sativa RepID=Q8RUP8_ORYSJ 1.0e-13
FL-Next: sp=Probable methionyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: methionyl-trna synthetase 7.75332e-16
C-terminus
sp_v2.0_unigene78860 SustainPine v2.0 635
AutoFact: Lysyl-tRNA synthetase (Fragment) n=6 Tax=Magnoliophyta RepID=D7U9T8_VITVI 0.0
FL-Next: sp=Lysyl-tRNA synthetase; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: lysyl-trna synthetase 0.0
Internal
sp_v2.0_unigene78910 SustainPine v2.0 522
AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene79084 SustainPine v2.0 317
AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s23 3.68378e-28
N-terminus
sp_v2.0_unigene79400 SustainPine v2.0 915
AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s11 0.0
Complete
sp_v2.0_unigene79454 SustainPine v2.0 386
AutoFact: RecName: Full=Eukaryotic translation initiation factor 5A; Short=eIF-5A emb|CAB65463.1| translation initiation factor 5A precursor protein (eIF-5A) [Senecio vernalis] 5.99756e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene79555 SustainPine v2.0 596
AutoFact: Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NLJ2_PICSI 0.0
FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: proteasome subunit beta type-6 0.0
C-terminus
sp_v2.0_unigene80062 SustainPine v2.0 568
AutoFact: ribosomal protein L2-like [Solanum tuberosum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene80087 SustainPine v2.0 843
AutoFact: ribosomal protein L2-like [Solanum tuberosum] 6.02558e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l2 0.0
Putative Complete
sp_v2.0_unigene80416 SustainPine v2.0 297
AutoFact: GRP multi-domain protein 6.0e-09
Coding
sp_v2.0_unigene80586 SustainPine v2.0 609
AutoFact: Eukaryotic translation initiation factor 5A 2 n=3 Tax=Picea RepID=Q3ZDK4_PICAB 6.0e-30
FL-Next: tr=Eukaryotic translation initiation factor 5A 2; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: eukaryotic translation initiation factor 5a1 9.87628e-33
Complete
sp_v2.0_unigene80598 SustainPine v2.0 651
AutoFact: Eukaryotic translation initiation factor 5A 2 n=3 Tax=Picea RepID=Q3ZDK4_PICAB 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 5a 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain