Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: WD40-repeat-containing domain

Term: IPR017986  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene10873 SustainPine v2.0 469
• AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTB5_RICCO 5.0e-18
• FL-Next: tr=Nucleotide binding protein, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: nucleotide binding 3.40779e-20
N-terminus
sp_v2.0_unigene10904 SustainPine v2.0 1757
• AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAM13156.1| unknown protein [Arabidopsis thaliana] gb|AAN15609.1| unknown protein [Arabidopsis thaliana] gb|AEE29984.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=WD repeat-containing protein DWA2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: transducin family protein 0.0
Complete
sp_v2.0_unigene10967 SustainPine v2.0 3460
• AutoFact: Katanin p80 WD40 repeat-containing subunit B1-1 [Arabidopsis thaliana] sp|Q8H0T9.3|KTNB1_ARATH RecName: Full=Katanin p80 WD40 repeat-containing subunit B1 homolog 1 gb|AAN72064.1| putative protein [Arabidopsis thaliana] gb|AED93166.1| Katanin p80 WD40 rep 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: katanin p80 wd40 repeat-containing subunit b1 homolog 1-like 0.0
Complete
sp_v2.0_unigene11025 SustainPine v2.0 1706
• AutoFact: Aladin-related / adracalin-related protein n=3 Tax=Arabidopsis RepID=Q8GWR1_ARATH 0.0
• FL-Next: sp=Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
• Blast2go: aladin-related adracalin-related protein 0.0
Complete
sp_v2.0_unigene11029 SustainPine v2.0 911
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAL86343.1| unknown protein [Arabidopsis thaliana] gb|AAM91698.1| unknown protein [Arabidopsis thaliana] gb|AEE82567.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 7.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
sp_v2.0_unigene11056 SustainPine v2.0 996
• AutoFact: Unassigned protein
• FL-Next: sp=DDB1- and CUL4-associated factor homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: ddb1- and cul4-associated factor homolog 1-like 0.0
Internal
sp_v2.0_unigene11094 SustainPine v2.0 827
• AutoFact: transducin/WD-40 repeat family protein [Olimarabidopsis pumila] 0.0
• FL-Next: tr=LP6; Pinus taeda (Loblolly pine). 0.0
• Blast2go: wd repeat and hmg-box dna-binding protein 1-like 0.0
N-terminus
sp_v2.0_unigene11110 SustainPine v2.0 2006
• AutoFact: tryptophan aminotransferase related 2 [Arabidopsis thaliana] ref|NP_974608.1| tryptophan aminotransferase related 2 [Arabidopsis thaliana] gb|AAK92714.1| putative alliin lyase [Arabidopsis thaliana] gb|AAM14394.1| putative alliin lyase [Arabidopsis thalia 0.0
• FL-Next: sp=Tryptophan aminotransferase-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: alliin lyase 0.0
Complete
sp_v2.0_unigene11129 SustainPine v2.0 811
• AutoFact: Katanin p80 WD40 repeat-containing subunit B1-1 [Arabidopsis thaliana] sp|Q8H0T9.3|KTNB1_ARATH RecName: Full=Katanin p80 WD40 repeat-containing subunit B1 homolog 1 gb|AAN72064.1| putative protein [Arabidopsis thaliana] gb|AED93166.1| Katanin p80 WD40 rep 5.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: katanin p80 wd40 repeat-containing subunit b1 homolog 1-like 6.4305e-25
C-terminus
sp_v2.0_unigene11354 SustainPine v2.0 1734
• AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RWJ4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcriptional corepressor leunig 0.0
C-terminus
sp_v2.0_unigene11568 SustainPine v2.0 1083
• AutoFact: protein TOPLESS [Arabidopsis thaliana] ref|NP_849672.1| protein TOPLESS [Arabidopsis thaliana] ref|NP_001031050.1| protein TOPLESS [Arabidopsis thaliana] ref|NP_001031051.1| protein TOPLESS [Arabidopsis thaliana] sp|Q94AI7.1|TPL_ARATH RecName: Full=Protei 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein topless 0.0
N-terminus
sp_v2.0_unigene11583 SustainPine v2.0 1854
• AutoFact: prolactin regulatory element-binding protein [Arabidopsis thaliana] sp|Q39221.4|STLP2_ARATH RecName: Full=SEC12-like protein 2 gb|AAC67323.1| putative protein transport protein SEC12p [Arabidopsis thaliana] gb|AAL67028.1| putative protein transport protei 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene11708 SustainPine v2.0 1225
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAB87620.1| putative protein [Arabidopsis thaliana] gb|AAM64344.1| unknown [Arabidopsis thaliana] gb|ABF85783.1| At5g14530 [Arabidopsis thaliana] gb|AED92044.1| transducin/WD40 domain-co 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: set1 complex component swd2 0.0
C-terminus
sp_v2.0_unigene11717 SustainPine v2.0 867
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
• Blast2go: beach domain-containing protein lvsa-like 0.0
Internal
sp_v2.0_unigene11754 SustainPine v2.0 851
• AutoFact: Histone H3 methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SRV1_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: histone h3 methyltransferase complex and rna cleavage factor ii subunit swd2 0.0
Putative C-terminus
sp_v2.0_unigene11789 SustainPine v2.0 750
• AutoFact: DUF3593 domain containing protein 2.0e-36
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: uncharacterized protein 0.0
N-terminus
sp_v2.0_unigene11802 SustainPine v2.0 773
• AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SA71_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retinoblastoma-binding protein 5-like 0.0
Putative Complete
sp_v2.0_unigene11821 SustainPine v2.0 787
• AutoFact: glycine-rich protein [Arabidopsis thaliana] ref|NP_001190893.1| glycine-rich protein [Arabidopsis thaliana] ref|NP_001190894.1| glycine-rich protein [Arabidopsis thaliana] gb|AEE86144.1| glycine-rich protein [Arabidopsis thaliana] gb|AEE86145.1| glycine-r 0.0
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
• Blast2go: uncharacterized protein 0.0
Internal
sp_v2.0_unigene11875 SustainPine v2.0 364
• AutoFact: F21J9.19 n=2 Tax=Arabidopsis RepID=Q9FYL1_ARATH 4.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: f-box and wd40 domain 0.0
Internal
sp_v2.0_unigene11932 SustainPine v2.0 379
• AutoFact: STY-L protein n=1 Tax=Antirrhinum majus RepID=Q6H975_ANTMA 2.0e-22
• FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: leunig-like protein 9.61843e-26
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain