Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: WD40 repeat

Term: IPR001680  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene4503 SustainPine v2.0 1498
AutoFact: Cellulose synthase-like protein n=2 Tax=Populus RepID=B9IPJ4_POPTR 0.0
FL-Next: tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine). 0.0
Blast2go: cellulose synthase-like protein 0.0
C-terminus
sp_v2.0_unigene4539 SustainPine v2.0 1332
AutoFact: WD-repeat protein [Arabidopsis arenosa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene4617 SustainPine v2.0 1743
AutoFact: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Arabidopsis thaliana] sp|O22212.1|PRP4_ARATH RecName: Full=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; AltName: Full=Protein EMBRYO DEFECTIVE 2776 gb|AAB84332.1| putative small nuclear 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u4 u6 small nuclear ribonucleoprotein prp4-like 0.0
Putative Complete
sp_v2.0_unigene4734 SustainPine v2.0 970
AutoFact: Periodic tryptophan protein-associated region; WD40-like [Medicago truncatula] 0.0
FL-Next: sp=Guanine nucleotide-binding protein subunit beta-like protein B; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: periodic tryptophan protein 2 0.0
Putative C-terminus
sp_v2.0_unigene4931 SustainPine v2.0 1765
AutoFact: Transcriptional corepressor LEUNIG n=1 Tax=Arabidopsis thaliana RepID=F4JUD2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional corepressor leunig 0.0
Putative Complete
sp_v2.0_unigene5297 SustainPine v2.0 2096
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01754.1| putative protein [Arabidopsis thaliana] gb|AAL36367.1| unknown protein [Arabidopsis thaliana] gb|AAM14196.1| unknown protein [Arabidopsis thaliana] gb|AED92176.1| transducin/ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosome biogenesis protein wdr12 homolog 0.0
Complete
sp_v2.0_unigene5334 SustainPine v2.0 2173
AutoFact: elongator protein 2 [Arabidopsis thaliana] gb|AEE32440.1| elongator protein 2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: elongator protein 2 0.0
Putative Complete
sp_v2.0_unigene5351 SustainPine v2.0 452
AutoFact: protein transport protein SEC31 [Arabidopsis thaliana] gb|AAM20553.1| putative protein [Arabidopsis thaliana] gb|AAP37794.1| At3g63460 [Arabidopsis thaliana] gb|AEE80486.1| protein transport protein SEC31 [Arabidopsis thaliana] 4.0e-23
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein transport protein sec31 5.79639e-27
N-terminus
sp_v2.0_unigene5382 SustainPine v2.0 2436
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAK50091.1|AF372951_1 At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AAN72242.1| At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AEE36064.1| transducin/WD-40 repeat-containing protein [Arab 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene5462 SustainPine v2.0 1528
AutoFact: protein FIZZY-related 3 [Arabidopsis thaliana] ref|NP_001190305.1| protein FIZZY-related 3 [Arabidopsis thaliana] sp|Q8LPL5.1|FZR3_ARATH RecName: Full=Protein FIZZY-RELATED 3; AltName: Full=Cell cycle switch protein CCS52B gb|AAM20433.1| cell cycle switch 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v2.0_unigene5488 SustainPine v2.0 1445
AutoFact: F-box/WD-40 repeat-containing protein [Arabidopsis thaliana] sp|Q9SV01.2|FBW4_ARATH RecName: Full=F-box/WD-40 repeat-containing protein At3g52030 gb|AEE78876.1| F-box/WD-40 repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: f-box wd-40 repeat-containing protein 0.0
C-terminus
sp_v2.0_unigene5570 SustainPine v2.0 1746
AutoFact: Unassigned protein
FL-Next: sp=U3 small nucleolar RNA-associated protein 18 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: u3 small nucleolar rna-associated protein 18 homolog 0.0
C-terminus
sp_v2.0_unigene5575 SustainPine v2.0 1527
AutoFact: Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome chromatin assembly factor group 0.0
Putative Complete
sp_v2.0_unigene5628 SustainPine v2.0 258
AutoFact: Phosphoinositide-3-kinase, regulatory subunit 4, p150 n=2 Tax=Arabidopsis RepID=Q9M0E5_ARATH 4.0e-11
FL-Next: tr=ATP binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: phosphoinositide 3-kinase regulatory subunit 4-like 2.59317e-13
Internal
sp_v2.0_unigene5772 SustainPine v2.0 1066
AutoFact: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like n=1 Tax=Medicago truncatula RepID=Q2HW32_MEDTR 0.0
FL-Next: sp=Topless-related protein 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: topless-related protein 3 0.0
C-terminus
sp_v2.0_unigene5803 SustainPine v2.0 1160
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAR92280.1| At5g50230 [Arabidopsis thaliana] gb|AAV85684.1| At5g50230 [Arabidopsis thaliana] gb|AED95914.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein tipd-like 0.0
Putative Complete
sp_v2.0_unigene5805 SustainPine v2.0 1832
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AEC09360.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing protein 20-like 0.0
C-terminus
sp_v2.0_unigene5895 SustainPine v2.0 414
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDF9_RICCO 0.0
FL-Next: tr=Nucleotide binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: beige-related and wd-40 repeat-containing protein 0.0
Internal
sp_v2.0_unigene5935 SustainPine v2.0 2481
AutoFact: Serine/threonine-protein phosphatase (Fragment) n=5 Tax=Magnoliophyta RepID=D7T1Q5_VITVI 0.0
FL-Next: sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine-protein phosphatase bsl2-like 0.0
Complete
sp_v2.0_unigene5978 SustainPine v2.0 790
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAE44475.1| WD repeat protein [Arabidopsis thaliana] gb|AEE85686.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 6.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: guanine nucleotide-binding protein subunit beta-like protein 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain