Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: WD40 repeat

Term: IPR001680  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene67531 SustainPine v2.0 507
AutoFact: cellulose synthase-like protein CslE [Nicotiana tabacum] 8.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cellulose synthase-like protein e6-like 0.0
Internal
sp_v2.0_unigene67613 SustainPine v2.0 472
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing 0.0
Putative C-terminus
sp_v2.0_unigene67665 SustainPine v2.0 404
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ramosa 1 enhancer locus 2 0.0
Putative C-terminus
sp_v2.0_unigene67788 SustainPine v2.0 300
AutoFact: WS02932.CR_A19 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02932_A19 3', mRNA sequence. 2.0e-40
FL-Next: Isoform 2 of Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 0.0
Blast2go: protein 4.66159e-24
Internal
sp_v2.0_unigene67855 SustainPine v2.0 277
AutoFact: putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group] 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 5.86439e-31
Internal
sp_v2.0_unigene67888 SustainPine v2.0 642
AutoFact: Cellulose synthase (Fragment) n=1 Tax=Pinus radiata RepID=Q4VWW6_PINRA 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: cellulose synthase a catalytic subunit 3 0.0
C-terminus
sp_v2.0_unigene68262 SustainPine v2.0 421
AutoFact: cellulose synthase 5 [Physcomitrella patens] 2.0e-40
FL-Next: tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine). 0.0
Blast2go: cellulose synthase 0.0
Internal
sp_v2.0_unigene68381 SustainPine v2.0 438
AutoFact: eIF-4A n=4 Tax=Poaceae RepID=B5AKW1_PENAM 8.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 9.41915e-34
N-terminus
sp_v2.0_unigene68622 SustainPine v2.0 659
AutoFact: Putative RNA Binding Protein 45 n=2 Tax=Oryza sativa Japonica Group RepID=Q6YZ94_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mrna binding post-transcriptional regulator 0.0
Internal
sp_v2.0_unigene68655 SustainPine v2.0 491
AutoFact: [R] COG2319 FOG: WD40 repeat 3.0e-05
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: bromodomain and wd repeat-containing protein 0.0
Internal
sp_v2.0_unigene69149 SustainPine v2.0 415
AutoFact: coatomer alpha subunit-like protein [Lotus japonicus] 7.0e-10
FL-Next: sp=Coatomer subunit alpha-3; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: coatomer alpha expressed 4.09083e-11
Internal
sp_v2.0_unigene69336 SustainPine v2.0 257
AutoFact: Unassigned protein
FL-Next: sp=E3 ubiquitin-protein ligase COP1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: e3 ubiquitin-protein ligase cop1 2.77979e-28
Internal
sp_v2.0_unigene69390 SustainPine v2.0 433
AutoFact: Os02g0137000 protein (Fragment) n=3 Tax=Oryza sativa Japonica Group RepID=Q0E448_ORYSJ 5.0e-30
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Blast2go: transducin wd40 domain-containing protein 2.17386e-34
Internal
sp_v2.0_unigene69567 SustainPine v2.0 427
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SHZ2_RICCO 5.0e-40
FL-Next: tr=WD-repeat protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: guanine nucleotide-binding protein 9.15338e-40
Putative C-terminus
sp_v2.0_unigene69870 SustainPine v2.0 456
AutoFact: prolactin regulatory element-binding protein [Arabidopsis thaliana] sp|Q39221.4|STLP2_ARATH RecName: Full=SEC12-like protein 2 gb|AAC67323.1| putative protein transport protein SEC12p [Arabidopsis thaliana] gb|AAL67028.1| putative protein transport protei 2.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein transport protein sec12p 1.64514e-17
Putative C-terminus
sp_v2.0_unigene70082 SustainPine v2.0 349
AutoFact: pentatricopeptide (PPR) repeat-containing protein 5.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 1.13248e-26
Internal
sp_v2.0_unigene70216 SustainPine v2.0 499
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SMF9_RICCO 7.0e-32
FL-Next: Isoform 2 of Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 0.0
Blast2go: protein topless 1.34707e-31
Internal
sp_v2.0_unigene70305 SustainPine v2.0 222
AutoFact: putative small nuclear ribonucleoprotein Prp4p [Arabidopsis thaliana] dbj|BAF01385.1| putative U4/U6 small nuclear ribonucleoprotein [Arabidopsis thaliana] 6.0e-07
FL-Next: sp=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: u4 u6 small nuclear ribonucleoprotein prp4-like 2.81745e-10
Internal
sp_v2.0_unigene70339 SustainPine v2.0 527
AutoFact: THO complex subunit 3 [Arabidopsis thaliana] dbj|BAB09295.1| unnamed protein product [Arabidopsis thaliana] gb|AAM13119.1| unknown protein [Arabidopsis thaliana] gb|AAN15493.1| unknown protein [Arabidopsis thaliana] gb|AED96724.1| THO complex subunit 3 [A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tho complex subunit 3 0.0
C-terminus
sp_v2.0_unigene70428 SustainPine v2.0 379
AutoFact: WD-40 repeat protein-like (Fragment) n=1 Tax=Populus suaveolens RepID=Q1HIU4_9ROSI 2.0e-22
FL-Next: sp=Topless-related protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ramosa 1 enhancer locus 2 7.82695e-24
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain