Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Nucleotide-binding, alpha-beta plait

Term: IPR012677  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene7035 SustainPine v2.0 1513
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 3.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna and export factor binding 0.0
Complete
sp_v2.0_unigene7071 SustainPine v2.0 1740
AutoFact: RNA-binding protein with multiple splicing, putative n=1 Tax=Ricinus communis RepID=B9SG87_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cell wall integrity protein scw1 0.0
Complete
sp_v2.0_unigene7190 SustainPine v2.0 2095
AutoFact: Drf_FH1 multi-domain protein 2.0e-11
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: tbp-associated factor 15b 0.0
Complete
sp_v2.0_unigene7241 SustainPine v2.0 1058
AutoFact: Metal transporter Nramp3 n=3 Tax=Poaceae RepID=NRAM3_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: metal transporter nramp6 0.0
N-terminus
sp_v2.0_unigene7321 SustainPine v2.0 1716
AutoFact: La protein 1 [Arabidopsis thaliana] gb|AAL07086.1| unknown protein [Arabidopsis thaliana] gb|AEE86109.1| La protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: la protein 1 0.0
Complete
sp_v2.0_unigene7411 SustainPine v2.0 1397
AutoFact: putative RNA-binding protein RBP37 [Oryza sativa Japonica Group] dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group] dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza s 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein rbp37 0.0
C-terminus
sp_v2.0_unigene7468 SustainPine v2.0 2113
AutoFact: putative DNA binding protein [Trifolium pratense] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding post-transcriptional regulator csx1-like 0.0
Complete
sp_v2.0_unigene7564 SustainPine v2.0 1835
AutoFact: putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] dbj|BAD82096.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] gb|EAY76689.1| hypothetical protein OsI_04643 [Oryza sativa Indica Group] gb|EAZ14353.1| hypothetical p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding region-containing 0.0
Putative Complete
sp_v2.0_unigene7585 SustainPine v2.0 2688
AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] sp|Q9C5Z1.1|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb|AAG53615.1|AF2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 3 subunit b-like 0.0
Complete
sp_v2.0_unigene7609 SustainPine v2.0 1568
AutoFact: putative strictosidine synthase [Arabidopsis thaliana] gb|AAO64095.1| putative strictosidine synthase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: strictosidine synthase family protein 0.0
Complete
sp_v2.0_unigene7644 SustainPine v2.0 275
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 1.86874e-11
Internal
sp_v2.0_unigene7676 SustainPine v2.0 2619
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thalia 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene7777 SustainPine v2.0 3775
AutoFact: Cell division protein ftsH, putative n=1 Tax=Ricinus communis RepID=B9SHY4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic-like 0.0
Complete
sp_v2.0_unigene7856 SustainPine v2.0 1282
AutoFact: bidirectional amino acid transporter 1 [Arabidopsis thaliana] gb|AAB71542.1| putative amino acid or GABA permease [Arabidopsis thaliana] gb|AAD14517.2| putative amino acid or GABA permease [Arabidopsis thaliana] gb|AEC05409.1| bidirectional amino acid tra 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized amino-acid permease -like 0.0
N-terminus
sp_v2.0_unigene7875 SustainPine v2.0 893
AutoFact: SHR5-receptor-like kinase [Saccharum hybrid cultivar SP70-1143] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable lrr receptor-like serine threonine-protein kinase at1g56130-like 0.0
Putative C-terminus
sp_v2.0_unigene7924 SustainPine v2.0 842
AutoFact: putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp|C0LGV0.1|Y5487_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At5g48740; Flags: Precursor gb|ACN59385.1| leucine-rich repeat receptor-like 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 3.72045e-42
C-terminus
sp_v2.0_unigene7966 SustainPine v2.0 1748
AutoFact: FERONIA receptor-like kinase [Cardamine flexuosa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: feronia receptor-like kinase 0.0
C-terminus
sp_v2.0_unigene7987 SustainPine v2.0 1472
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 0.0
Complete
sp_v2.0_unigene8007 SustainPine v2.0 1877
AutoFact: homeodomain-leucine zipper protein 56 [Glycine max] 8.00001e-41
FL-Next: sp=Homeobox-leucine zipper protein HOX20; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: homeobox-leucine zipper protein athb-6-like 0.0
Complete
sp_v2.0_unigene8016 SustainPine v2.0 1541
AutoFact: Os05g0427300 protein n=2 Tax=Oryza sativa RepID=Q0DI02_ORYSJ 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain