Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene42388 SustainPine v2.0 370
AutoFact: [J] COG5099 RNA-binding protein of the Puf family, translational repressor 7.0e-22
FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 2.8026e-45
Putative C-terminus
sp_v2.0_unigene42396 SustainPine v2.0 702
AutoFact: Ank_2 domain containing protein 3.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 30-like 0.0
N-terminus
sp_v2.0_unigene42718 SustainPine v2.0 459
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: low quality protein: zinc finger ccch domain-containing protein 6-like 5.73273e-09
Internal
sp_v2.0_unigene43155 SustainPine v2.0 496
AutoFact: Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare RepID=F2CVK8_HORVD 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: dna mismatch repair protein 0.0
Internal
sp_v2.0_unigene46077 SustainPine v2.0 578
AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein ZFN-like gb|AAD45720.1| zinc finger protein [Pisum sativum] 7.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein zfn-like isoform 2 0.0
Internal
sp_v2.0_unigene46297 SustainPine v2.0 487
AutoFact: RNA m5u methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SWC0_RICCO 2.0e-17
FL-Next: sp=Zinc finger CCCH domain-containing protein 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 24-like 1.55744e-19
Internal
sp_v2.0_unigene46557 SustainPine v2.0 650
AutoFact: MIF4G domain containing protein 2.0e-21
FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
Blast2go: eukaryotic initiation factor iso-4f subunit p82-34-like 0.0
Internal
sp_v2.0_unigene49052 SustainPine v2.0 586
AutoFact: Root phototropism protein, putative n=1 Tax=Ricinus communis RepID=B9SKU3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: btb poz domain-containing protein at1g30440-like 0.0
N-terminus
sp_v2.0_unigene49161 SustainPine v2.0 282
AutoFact: Unassigned protein
unknown
sp_v2.0_unigene49485 SustainPine v2.0 448
AutoFact: ATP-binding cassette transporter, subfamily D, member 9, SmABCD9 n=2 Tax=Selaginella moellendorffii RepID=D8QV80_SELML 6.0e-30
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Blast2go: abc transporter-like protein 7.18049e-35
C-terminus
sp_v2.0_unigene52528 SustainPine v2.0 223
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 1.0e-17
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: rna recognition motif -containing protein 1.59963e-28
Internal
sp_v2.0_unigene54000 SustainPine v2.0 298
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 4.0e-09
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: rna recognition motif -containing protein 7.0194e-17
Internal
sp_v2.0_unigene54136 SustainPine v2.0 372
AutoFact: [RTKL] COG0515 Serine/threonine protein kinase 2.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp binding 4.05112e-27
C-terminus
sp_v2.0_unigene54665 SustainPine v2.0 443
AutoFact: receptor protein kinase, putative [Arabidopsis thaliana] 6.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 3.08286e-44
Internal
sp_v2.0_unigene55028 SustainPine v2.0 302
AutoFact: Protein kinase n=4 Tax=Andropogoneae RepID=B6SY15_MAIZE 6.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable receptor-like protein kinase at1g11050-like 0.0
Internal
sp_v2.0_unigene56289 SustainPine v2.0 421
AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 4; Short=OsC3H4 dbj|BAE95808.1| ATP-dependent RNA helicase A -like [Oryza sativa Japonica Group] 4.0e-33
FL-Next: sp=Zinc finger CCCH domain-containing protein 4; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: zinc finger ccch domain-containing protein 31 2.76056e-43
Internal
sp_v2.0_unigene57090 SustainPine v2.0 282
AutoFact: Contains similarity to RNA binding protein PufA from Dictyostelium discoideum gi|5106561 and contains multiple Pumilio-family RNA binding PF|00806 domains [Arabidopsis thaliana] 3.0e-25
FL-Next: sp=Putative pumilio homolog 8, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 1.15729e-36
Internal
sp_v2.0_unigene57513 SustainPine v2.0 531
AutoFact: Peroxisomal membrane ABC transporter family, PMP family (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HYE2_POPTR 0.0
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: peroxisomal membrane abc transporter pmp family 0.0
Internal
sp_v2.0_unigene58572 SustainPine v2.0 399
AutoFact: zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] sp|Q84WU9.1|C3H64_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 64; Short=AtC3H64 gb|AAO22569.1| unknown protein [Arabidopsis thaliana] gb|AED96821.1| zinc finger CCCH d 4.0e-30
FL-Next: sp=Zinc finger CCCH domain-containing protein 59; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: zinc finger ccch domain-containing protein 64 2.07885e-40
Internal
sp_v2.0_unigene59021 SustainPine v2.0 329
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=2 Tax=rosids RepID=B9R8U8_RICCO 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor u2af 38 kda subunit 1.66236e-32
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain