Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene17403 SustainPine v2.0 849
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 2.30151e-11
Putative N-terminus
sp_v2.0_unigene17740 SustainPine v2.0 1704
AutoFact: Prolyl 4-hydroxylase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9RSW4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: prolyl 4-hydroxylase alpha subunit-like protein 0.0
Complete
sp_v2.0_unigene17817 SustainPine v2.0 873
AutoFact: zinc finger, matrin type 5 [Danio rerio] 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding zinc ion binding protein 0.0
Complete
sp_v2.0_unigene18634 SustainPine v2.0 819
AutoFact: Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula] 3.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger protein 0.0
Putative C-terminus
sp_v2.0_unigene18643 SustainPine v2.0 3188
AutoFact: zinc finger CCCH domain-containing protein 18 [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05899.1| zinc finger C 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
Complete
sp_v2.0_unigene18724 SustainPine v2.0 428
AutoFact: zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana] ref|NP_001030840.1| zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana] sp|Q9SV09.1|C3H46_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 46; Short=AtC3H4 5.0e-13
FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna-binding (rrm rbd rnp motifs) family protein 2.9193e-15
N-terminus
sp_v2.0_unigene18949 SustainPine v2.0 451
AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein ZFN-like gb|AAD45720.1| zinc finger protein [Pisum sativum] 3.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein zfn-like isoform 1 9.85709e-19
N-terminus
sp_v2.0_unigene19161 SustainPine v2.0 407
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
FL-Next: sp=Putative pumilio homolog 8, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 0.0
Internal
sp_v2.0_unigene19400 SustainPine v2.0 529
AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SPH6_RICCO 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene19688 SustainPine v2.0 1250
AutoFact: Zinc finger, CCCH-type n=1 Tax=Medicago truncatula RepID=A2Q3L5_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 30-like 0.0
Internal
sp_v2.0_unigene21245 SustainPine v2.0 2491
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene23482 SustainPine v2.0 902
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u2 snrnp auxiliary small 0.0
N-terminus
sp_v2.0_unigene23865 SustainPine v2.0 802
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SN77_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor u2af 35 kda subunit 0.0
N-terminus
sp_v2.0_unigene24879 SustainPine v2.0 830
AutoFact: pfam00076, RRM_1, RNA recognition motif 0.0001
FL-Next: sp=Zinc finger CCCH domain-containing protein 27; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 3.08636e-41
Internal
sp_v2.0_unigene25047 SustainPine v2.0 819
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=2 Tax=rosids RepID=B9R8U8_RICCO 9.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor u2af 38 kda subunit 1.57276e-32
Putative C-terminus
sp_v2.0_unigene25120 SustainPine v2.0 1402
AutoFact: prolyl 4-hydroxylase [Dianthus caryophyllus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: prolyl 4-hydroxylase subunit alpha-1-like 0.0
Complete
sp_v2.0_unigene25188 SustainPine v2.0 1235
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RT23_RICCO 9.80909e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 32 0.0
C-terminus
sp_v2.0_unigene25458 SustainPine v2.0 1142
AutoFact: zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] gb|AED96820.1| zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 59; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: zinc finger ccch domain-containing protein 64 0.0
C-terminus
sp_v2.0_unigene25702 SustainPine v2.0 1350
AutoFact: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1 [Arabidopsis thaliana] sp|O82663.1|DHSA1_ARATH RecName: Full=Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial; AltName: Full=Flavoprotein subunit 1 of complex II; Short= 0.0
FL-Next: sp=Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: succinate dehydrogenase 0.0
C-terminus
sp_v2.0_unigene25992 SustainPine v2.0 831
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7W6_RICCO 1.0e-21
FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 53-like 1.09144e-23
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain