Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene2461 SustainPine v2.0 1246
• AutoFact: putative LRR receptor-like serine/threonine-protein kinase RKF3 [Arabidopsis thaliana] sp|P93050.1|RKF3_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase RKF3; AltName: Full=Receptor-like kinase in flowers 3; Flags: Precursor 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable lrr receptor-like serine threonine-protein kinase rkf3-like 0.0
C-terminus
sp_v2.0_unigene2507 SustainPine v2.0 2042
• AutoFact: SRI domain containing protein 2.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger ccch domain-containing protein 0.0
C-terminus
sp_v2.0_unigene2526 SustainPine v2.0 3193
• AutoFact: Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding 0.0
Complete
sp_v2.0_unigene2572 SustainPine v2.0 953
• AutoFact: endoribonuclease/protein kinase IRE1-like protein [Arabidopsis thaliana] gb|AAK15470.1|AF308596_1 endoribonuclease/protein kinase IRE1-like protein [Arabidopsis thaliana] dbj|BAB63367.1| Ire1 homolog-2 [Arabidopsis thaliana] gb|AAD32909.2| putative protei 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: endoribonuclease protein kinase ire1 8.54202e-37
C-terminus
sp_v2.0_unigene2906 SustainPine v2.0 1437
• AutoFact: zinc finger CCCH domain-containing protein 15 [Arabidopsis thaliana] sp|Q9C9F5.1|C3H15_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 15; Short=AtC3H15 gb|AAG52611.1|AC016447_20 putative zinc finger protein; 81747-79917 [Arabidopsis thalia 2.0e-39
• FL-Next: sp=Zinc finger CCCH domain-containing protein 15; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: zinc finger ccch domain-containing protein 15 0.0
Complete
sp_v2.0_unigene3154 SustainPine v2.0 1503
• AutoFact: zinc finger CCCH domain-containing protein 12 [Arabidopsis thaliana] sp|Q9LQM3.1|C3H12_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 12; Short=AtC3H12 gb|AAF81332.1|AC007767_12 Contains similarity to an unknown protein At2g35430 gi|360814 1.0e-35
• FL-Next: sp=Zinc finger CCCH domain-containing protein 56; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: zinc finger ccch domain-containing protein 56-like 0.0
N-terminus
sp_v2.0_unigene3243 SustainPine v2.0 3511
• AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif -containing protein 0.0
Putative Complete
sp_v2.0_unigene3278 SustainPine v2.0 788
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: unknown [Picea sitchensis] 0.0
C-terminus
sp_v2.0_unigene4211 SustainPine v2.0 1008
• AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna mismatch repair protein 0.0
Complete
sp_v2.0_unigene5081 SustainPine v2.0 1134
• AutoFact: zinc finger CCCH domain-containing protein 51 [Arabidopsis thaliana] ref|NP_850780.1| zinc finger CCCH domain-containing protein 51 [Arabidopsis thaliana] sp|Q9FNG6.1|C3H51_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 51; Short=AtC3H51 d 0.0
• FL-Next: sp=Zinc finger CCCH domain-containing protein 15; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: zinc finger ccch domain-containing protein 51 0.0
C-terminus
sp_v2.0_unigene5362 SustainPine v2.0 1320
• AutoFact: phototropic-responsive NPH3-like protein [Arabidopsis thaliana] ref|NP_974103.1| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] ref|NP_001185347.1| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] sp|Q9C9V6.1|Y1790_ARATH Re 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: phototropic-responsive nph3-like protein 0.0
Putative C-terminus
sp_v2.0_unigene5533 SustainPine v2.0 2909
• AutoFact: zinc finger CCCH domain-containing protein 20 [Arabidopsis thaliana] sp|O82199.1|C3H20_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 20; Short=AtC3H20 gb|AAC62135.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana] gb|AAM6084 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ccch-type zinc finger protein 0.0
Complete
sp_v2.0_unigene6558 SustainPine v2.0 1993
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u2 snrnp auxiliary small 0.0
Complete
sp_v2.0_unigene7875 SustainPine v2.0 893
• AutoFact: SHR5-receptor-like kinase [Saccharum hybrid cultivar SP70-1143] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable lrr receptor-like serine threonine-protein kinase at1g56130-like 0.0
Putative C-terminus
sp_v2.0_unigene8202 SustainPine v2.0 1582
• AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj|BAD15406.1| KH domain-containing protein-like [Oryza sativa Japonica Group] gb|EAY84850.1| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb|EAZ22072.1| hypothetica 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger ccch domain-containing protein 14-like 0.0
Complete
sp_v2.0_unigene8302 SustainPine v2.0 1653
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=2 Tax=rosids RepID=B9R8U8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor u2af 38 kda subunit 0.0
Complete
sp_v2.0_unigene8379 SustainPine v2.0 1412
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene8529 SustainPine v2.0 916
• AutoFact: putative CCCH-type zinc finger protein [Arabidopsis thaliana] 5.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ccch-type zinc finger protein 2.10195e-44
Internal
sp_v2.0_unigene8795 SustainPine v2.0 783
• AutoFact: Rrm/rnp domain, putative n=1 Tax=Ricinus communis RepID=B9SF86_RICCO 2.0e-18
• FL-Next: sp=Zinc finger CCCH domain-containing protein 41; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: zinc finger ccch domain-containing protein 41 6.73948e-20
Putative C-terminus
sp_v2.0_unigene9371 SustainPine v2.0 683
• AutoFact: putative receptor-like protein kinase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: receptor-like protein kinase 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain