Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene9288 SustainPine v2.0 3751
AutoFact: Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SNG9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: receptor protein 0.0
Complete
sp_v2.0_unigene9289 SustainPine v2.0 1221
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7C9_RICCO 6.0e-20
FL-Next: tr=DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: protein 3.90149e-22
C-terminus
sp_v2.0_unigene9371 SustainPine v2.0 683
AutoFact: putative receptor-like protein kinase [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: receptor-like protein kinase 0.0
C-terminus
sp_v2.0_unigene9393 SustainPine v2.0 2235
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene9397 SustainPine v2.0 1269
AutoFact: Stachyose synthase, putative n=1 Tax=Ricinus communis RepID=B9SXA4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: alkaline alpha galactosidase i 0.0
Putative Complete
sp_v2.0_unigene9401 SustainPine v2.0 3374
AutoFact: Unassigned protein
FL-Next: Isoform 2 of Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 0.0
Blast2go: zinc finger ccch domain-containing protein 53-like 0.0
Putative Complete
sp_v2.0_unigene9528 SustainPine v2.0 1444
AutoFact: RHO guanyl-nucleotide exchange factor 9 [Arabidopsis thaliana] emb|CAB41934.1| putative protein [Arabidopsis thaliana] emb|CAB78366.1| putative protein [Arabidopsis thaliana] gb|ABE66063.1| hypothetical protein At4g13240 [Arabidopsis thaliana] gb|AEE83250 0.0
FL-Next: sp=Rho guanine nucleotide exchange factor 8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene9581 SustainPine v2.0 573
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S290_RICCO 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
C-terminus
sp_v2.0_unigene9598 SustainPine v2.0 1110
AutoFact: Putative copine I (Fragment) n=1 Tax=Picea abies RepID=B2KZG6_PICAB 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: e3 ubiquitin-protein ligase rglg2-like 0.0
N-terminus
sp_v2.0_unigene9746 SustainPine v2.0 1138
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_001030873.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAR23731.1| At3g56510 [Arabidopsis thaliana] gb|AAS68115.1| At3g56510 [Arabidopsis thaliana] dbj|BAF0014 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna recognition motif-containing protein 0.0
C-terminus
sp_v2.0_unigene9775 SustainPine v2.0 1608
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 5.99994e-41
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: glycine-rich rna-binding protein 0.0
Complete
sp_v2.0_unigene9836 SustainPine v2.0 983
AutoFact: pollen-specific kinase partner protein [Solanum lycopersicum] 0.0
FL-Next: sp=Rho guanine nucleotide exchange factor 8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene9905 SustainPine v2.0 2230
AutoFact: cell division protease ftsH-11 [Arabidopsis thaliana] sp|Q9FGM0.1|FTSHB_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial; Short=AtFTSH11; Flags: Precursor dbj|BAB08420.1| cell division protein FtsH protease-like 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial-like 0.0
Putative Complete
sp_v2.0_unigene10025 SustainPine v2.0 1457
AutoFact: putative splicing factor U2AF large chain [Arabidopsis thaliana] 2.0e-25
FL-Next: sp=Splicing factor U2af large subunit A; Nicotiana plumbaginifolia (Leadwort-leaved tobacco) (Tex-Mex tobacco). 0.0
Blast2go: rna recognition motif-containing protein 0.0
C-terminus
sp_v2.0_unigene10037 SustainPine v2.0 2542
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Putative Complete
sp_v2.0_unigene10050 SustainPine v2.0 785
AutoFact: DUF1431 multi-domain protein 4.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 2.80566e-11
C-terminus
sp_v2.0_unigene10061 SustainPine v2.0 1359
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AED98140.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heterogeneous nuclear 0.0
Complete
sp_v2.0_unigene10111 SustainPine v2.0 1070
AutoFact: RNA-dependent RNA polymerase 6 n=2 Tax=Arabidopsis RepID=RDR6_ARATH 0.0
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna-dependent rna polymerase 6 0.0
C-terminus
sp_v2.0_unigene10143 SustainPine v2.0 2112
AutoFact: copper ion binding protein, putative; K13171 serine/arginine repetitive matrix protein 1 1.0e-06
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 4.95543e-08
Internal
sp_v2.0_unigene10176 SustainPine v2.0 876
AutoFact: PRP38_assoc multi-domain protein 3.0e-09
Putative coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain