Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene7924 SustainPine v2.0 842
AutoFact: putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp|C0LGV0.1|Y5487_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At5g48740; Flags: Precursor gb|ACN59385.1| leucine-rich repeat receptor-like 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 3.72045e-42
C-terminus
sp_v2.0_unigene7966 SustainPine v2.0 1748
AutoFact: FERONIA receptor-like kinase [Cardamine flexuosa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: feronia receptor-like kinase 0.0
C-terminus
sp_v2.0_unigene7987 SustainPine v2.0 1472
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 0.0
Complete
sp_v2.0_unigene8007 SustainPine v2.0 1877
AutoFact: homeodomain-leucine zipper protein 56 [Glycine max] 8.00001e-41
FL-Next: sp=Homeobox-leucine zipper protein HOX20; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: homeobox-leucine zipper protein athb-6-like 0.0
Complete
sp_v2.0_unigene8016 SustainPine v2.0 1541
AutoFact: Os05g0427300 protein n=2 Tax=Oryza sativa RepID=Q0DI02_ORYSJ 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
Complete
sp_v2.0_unigene8031 SustainPine v2.0 2593
AutoFact: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative [Oryza sativa Japonica Group] gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japoni 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
Complete
sp_v2.0_unigene8064 SustainPine v2.0 1371
AutoFact: copine-like protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: e3 ubiquitin-protein ligase rglg1-like 0.0
C-terminus
sp_v2.0_unigene8143 SustainPine v2.0 1006
AutoFact: Ropgefa ROP GTPase guanyl-nucleotide exchange factor, PRONE domain-containing (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RG21_PHYPA 8.0e-14
FL-Next: sp=Rop guanine nucleotide exchange factor 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 6.2429e-15
N-terminus
sp_v2.0_unigene8302 SustainPine v2.0 1653
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=2 Tax=rosids RepID=B9R8U8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor u2af 38 kda subunit 0.0
Complete
sp_v2.0_unigene8353 SustainPine v2.0 1659
AutoFact: PREDICTED: similar to TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor isoform 6 [Canis familiaris] 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 4.582e-37
Complete
sp_v2.0_unigene8371 SustainPine v2.0 1953
AutoFact: Flowering time control protein FCA, putative n=1 Tax=Ricinus communis RepID=B9RZT3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: flowering time control protein 0.0
Putative Complete
sp_v2.0_unigene8492 SustainPine v2.0 1210
AutoFact: RNA binding protein n=3 Tax=Andropogoneae RepID=B6TN55_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding protein 0.0
Putative C-terminus
sp_v2.0_unigene8514 SustainPine v2.0 2211
AutoFact: Os08g0486200 protein n=3 Tax=Oryza sativa RepID=Q6ZDR7_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene8593 SustainPine v2.0 2959
AutoFact: RNA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9T403_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 5 10 0.0
Putative Complete
sp_v2.0_unigene8766 SustainPine v2.0 1523
AutoFact: U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Arabidopsis thaliana] gb|AAL62380.1| putative U1 small nuclear ribonucleoprotein 70 kDa [Arabidopsis thaliana] gb|AAM48016.1| putative U1 small nuclear ribonucleoprotein 70 kDa [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u11 u12 small nuclear ribonucleoprotein 35 kda protein 0.0
Putative Complete
sp_v2.0_unigene8795 SustainPine v2.0 783
AutoFact: Rrm/rnp domain, putative n=1 Tax=Ricinus communis RepID=B9SF86_RICCO 2.0e-18
FL-Next: sp=Zinc finger CCCH domain-containing protein 41; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 41 6.73948e-20
Putative C-terminus
sp_v2.0_unigene8831 SustainPine v2.0 661
AutoFact: Cyclophilin 59 n=4 Tax=Arabidopsis RepID=Q6Q151_ARATH 3.0e-08
FL-Next: tr=Cyclophilin 59; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase 5.53809e-07
N-terminus
sp_v2.0_unigene8878 SustainPine v2.0 798
AutoFact: glycine-rich RNA-binding protein PsGRBP [Pisum sativum] gb|ACI15745.1| glycine-rich RNA-binding protein [Pisum sativum] 4.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine-rich rna-binding protein 2 6.82991e-30
C-terminus
sp_v2.0_unigene8932 SustainPine v2.0 1378
AutoFact: putative RNA binding ribonucleoprotein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
Putative Complete
sp_v2.0_unigene9149 SustainPine v2.0 2007
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_68.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SVC9_VITVI 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 7.00649e-45
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain