Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene4560 SustainPine v2.0 1098
AutoFact: Peroxidase 10, putative n=1 Tax=Ricinus communis RepID=B9S775_RICCO 0.0
FL-Next: tr=Properoxidase; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: peroxidase 10-like 0.0
C-terminus
sp_v2.0_unigene4695 SustainPine v2.0 1651
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAD94469.1| putative RNA-binding protein [Arabidopsis thaliana] dbj|BAF01884.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AEC10093.1| RNA recognition motif-containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein with multiple splicing 0.0
C-terminus
sp_v2.0_unigene4746 SustainPine v2.0 1713
AutoFact: MEI2-like protein 4 [Arabidopsis thaliana] sp|Q9LYN7.1|AML4_ARATH RecName: Full=Protein MEI2-like 4; Short=AML4; AltName: Full=MEI2-like protein 4 emb|CAB87285.1| Mei2-like protein [Arabidopsis thaliana] dbj|BAE99028.1| Mei2-like protein [Arabidopsis thal 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein mei2-like 4-like 0.0
C-terminus
sp_v2.0_unigene4759 SustainPine v2.0 594
AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine-rich rna-binding 0.0
N-terminus
sp_v2.0_unigene4876 SustainPine v2.0 1637
AutoFact: nucleic acid binding protein1 [Zea mays] gb|AAA33486.1| nucleic acid-binding protein [Zea mays] gb|ACG38158.1| ribonucleoprotein [Zea mays] gb|ACL52389.1| unknown [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 31 kda chloroplastic-like 0.0
Complete
sp_v2.0_unigene4892 SustainPine v2.0 1147
AutoFact: Unassigned protein
FL-Next: sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum. 0.0
Blast2go: desiccation-related protein pcc13-62-like 0.0
Complete
sp_v2.0_unigene4901 SustainPine v2.0 1422
AutoFact: splicing factor [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich-splicing factor rsp31-like 0.0
Putative C-terminus
sp_v2.0_unigene4992 SustainPine v2.0 1644
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich-splicing factor rsp40 0.0
Complete
sp_v2.0_unigene5016 SustainPine v2.0 1412
AutoFact: putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] 0.0
FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna-dependent rna polymerase 6 0.0
Internal
sp_v2.0_unigene5120 SustainPine v2.0 2512
AutoFact: putative Ras-GTPase-activating protein binding protein 1 [Oryza sativa Japonica Group] dbj|BAG91794.1| unnamed protein product [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene5163 SustainPine v2.0 1719
AutoFact: pfam01762, Galactosyl_T, Galactosyltransferase 5.60519e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: avr9 elicitor response protein 0.0
Complete
sp_v2.0_unigene5218 SustainPine v2.0 1715
AutoFact: putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: splicing arginine serine-rich 0.0
Complete
sp_v2.0_unigene5226 SustainPine v2.0 817
AutoFact: glycine-rich RNA-binding protein-like [Arabidopsis thaliana] 7.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine-rich rna-binding 1.32014e-36
Putative N-terminus
sp_v2.0_unigene5306 SustainPine v2.0 1037
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAG30979.1|AC012396_15 RNA-binding glycine-rich protein, putative [Arabidopsis thaliana] gb|AAY17418.1| At1g73530 [Arabidopsis thaliana] gb|ABI49457.1| At1g73530 [Arabidopsis thaliana] gb| 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
Complete
sp_v2.0_unigene5337 SustainPine v2.0 551
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna recognition motif family expressed 6.78625e-26
Internal
sp_v2.0_unigene5383 SustainPine v2.0 2358
AutoFact: protein RHOMBOID-like 1 [Arabidopsis thaliana] dbj|BAF00472.1| hypothetical protein [Arabidopsis thaliana] gb|AEC08202.1| protein RHOMBOID-like 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: inactive rhomboid protein 1-like 0.0
Complete
sp_v2.0_unigene5670 SustainPine v2.0 1362
AutoFact: glycine-rich RNA-binding protein 3 [Arabidopsis thaliana] dbj|BAB10366.1| unnamed protein product [Arabidopsis thaliana] gb|AAL31194.1| AT5g61030/maf19_30 [Arabidopsis thaliana] gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana] dbj|BAH30642.1| hypo 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine-rich rna-binding 0.0
Complete
sp_v2.0_unigene5800 SustainPine v2.0 1401
AutoFact: WS00731.B21_I11 WS-PS-N-A-8 Picea glauca cDNA clone WS00731_I11 3, mRNA sequence. 0.0
FL-Next: sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum. 0.0
Blast2go: desiccation-related protein pcc13-62-like 0.0
Complete
sp_v2.0_unigene5852 SustainPine v2.0 1905
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAC42069.1| unknown protein [Arabidopsis thaliana] gb|AEE75401.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
Complete
sp_v2.0_unigene5862 SustainPine v2.0 1340
AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain