Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene85915 SustainPine v2.0 756
AutoFact: Gly_rich multi-domain protein 3.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 3.73816e-13
Internal
sp_v2.0_unigene86100 SustainPine v2.0 130
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 6.4071e-12
Internal
sp_v2.0_unigene86142 SustainPine v2.0 1020
AutoFact: MEI2-like protein 4 [Arabidopsis thaliana] sp|Q9LYN7.1|AML4_ARATH RecName: Full=Protein MEI2-like 4; Short=AML4; AltName: Full=MEI2-like protein 4 emb|CAB87285.1| Mei2-like protein [Arabidopsis thaliana] dbj|BAE99028.1| Mei2-like protein [Arabidopsis thal 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein mei2-like 4-like 0.0
C-terminus
sp_v2.0_unigene86174 SustainPine v2.0 262
AutoFact: Poly(A)-binding protein n=1 Tax=Glycine max RepID=Q00M91_SOYBN 5.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly -binding protein 4.0947e-23
C-terminus
sp_v2.0_unigene86254 SustainPine v2.0 793
AutoFact: 7TM_GPCR_Srz multi-domain protein 7.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 0.0
N-terminus
sp_v2.0_unigene86371 SustainPine v2.0 1151
AutoFact: Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IKW9_POPTR 0.0
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna-dependent rna polymerase 6 0.0
C-terminus
sp_v2.0_unigene86419 SustainPine v2.0 1129
AutoFact: RNA-binding protein [Medicago truncatula] 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene87110 SustainPine v2.0 723
AutoFact: Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Picea sitchensis RepID=A9NNT0_PICSI 0.0
FL-Next: sp=Eukaryotic translation initiation factor 3 subunit G; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: initiation factor 3g 0.0
N-terminus
sp_v2.0_unigene87813 SustainPine v2.0 616
AutoFact: Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Picea sitchensis RepID=A9NNT0_PICSI 2.0e-15
FL-Next: sp=Eukaryotic translation initiation factor 3 subunit G; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: initiation factor 3g 1.3992e-17
C-terminus
sp_v2.0_unigene88557 SustainPine v2.0 235
AutoFact: Drf_FH1 multi-domain protein 2.0e-08
Coding
sp_v2.0_unigene90980 SustainPine v2.0 432
AutoFact: Ftsh-like protease n=1 Tax=Pisum sativum RepID=Q6A167_PEA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial-like 0.0
Internal
sp_v2.0_unigene91079 SustainPine v2.0 1495
AutoFact: putative RNA binding protein [Oryza sativa Japonica Group] gb|ABF97192.1| RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] dbj|BAG95141.1| unnamed protein product [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
sp_v2.0_unigene91260 SustainPine v2.0 831
AutoFact: Nucleotide/sugar transporter family protein [Arabidopsis thaliana] sp|Q94EI9.1|PT314_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At3g14410 gb|AAK95272.1|AF410286_1 AT3g14410/MLN21_19 [Arabidopsis thaliana] gb|AAM10353.1| AT3g14410/ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleotide sugar transporter family protein 0.0
N-terminus
sp_v2.0_unigene91515 SustainPine v2.0 740
AutoFact: putative beta-1,3-galactosyltransferase 3 [Arabidopsis thaliana] sp|Q9ZV71.1|B3GT3_ARATH RecName: Full=Probable beta-1,3-galactosyltransferase 3 gb|AAC69935.1| unknown protein [Arabidopsis thaliana] gb|AAO42172.1| unknown protein [Arabidopsis thaliana] gb 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: beta- -galactosyltransferase sqv- 0.0
Putative N-terminus
sp_v2.0_unigene91612 SustainPine v2.0 473
AutoFact: U1 snRNP-interacting 70 kDa protein n=1 Tax=Triticum aestivum RepID=Q2QKB6_WHEAT 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 4.2188e-27
N-terminus
sp_v2.0_unigene91948 SustainPine v2.0 581
AutoFact: Putative U2 snRNP auxiliary factor (Fragment) n=1 Tax=Chenopodium rubrum RepID=Q1H8Q9_CHERU 3.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor u2af small subunit b 1.73016e-21
Internal
sp_v2.0_unigene92018 SustainPine v2.0 2202
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v2.0_unigene92281 SustainPine v2.0 365
AutoFact: Putative U1 small nuclear ribonucleoprotein n=3 Tax=Oryza sativa RepID=Q94LP1_ORYSJ 8.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 1.3232e-22
N-terminus
sp_v2.0_unigene92297 SustainPine v2.0 787
AutoFact: Heterogeneous nuclear ribonucleoprotein A3 n=4 Tax=Andropogoneae RepID=B6TGB9_MAIZE 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene92304 SustainPine v2.0 628
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 1.05036e-08
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain