Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene80868 SustainPine v2.0 861
AutoFact: alternative splicing regulator [Triticum aestivum] 9.94922e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich splicing 0.0
Putative N-terminus
sp_v2.0_unigene80915 SustainPine v2.0 524
AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB09056.1| unnamed protein product [Arabidopsis thaliana] gb|AAL86001.1| unknown protein [Arabidopsis thaliana] gb|AAM45065.1| unknown protein [Arab 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ras gtpase-activating protein-binding protein 5.99084e-26
Putative N-terminus
sp_v2.0_unigene80927 SustainPine v2.0 337
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.83426e-32
Internal
sp_v2.0_unigene80962 SustainPine v2.0 465
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 1.67236e-29
Putative N-terminus
sp_v2.0_unigene81003 SustainPine v2.0 343
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 3.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 4.54078e-15
Internal
sp_v2.0_unigene81008 SustainPine v2.0 396
AutoFact: RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] emb|CAB67657.2| splicing factor-like protein [Arabidopsis thaliana] dbj|BAH19424.1| AT3G53500 [Arabidopsis thaliana] gb|AEE79098.1| RNA recognition motif and 5.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif and cchc-type zinc finger domain-containing protein 5.11352e-34
N-terminus
sp_v2.0_unigene81028 SustainPine v2.0 465
AutoFact: DAG protein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SE52_RICCO 6.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dag chloroplast 0.0
N-terminus
sp_v2.0_unigene81035 SustainPine v2.0 715
AutoFact: U2 auxiliary factor small subunit [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u2 snrnp auxiliary small 0.0
N-terminus
sp_v2.0_unigene81058 SustainPine v2.0 521
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 4.06456e-27
C-terminus
sp_v2.0_unigene81127 SustainPine v2.0 1170
AutoFact: WS00731.B21_I11 WS-PS-N-A-8 Picea glauca cDNA clone WS00731_I11 3, mRNA sequence. 0.0
FL-Next: sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum. 0.0
Blast2go: desiccation-related protein pcc13-62-like isoform 2 0.0
Putative Complete
sp_v2.0_unigene81283 SustainPine v2.0 423
AutoFact: [OU] COG5082 Arginine methyltransferase-interacting protein, contains RING Zn-finger 3.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing arginine serine-rich 6 7.08497e-42
Internal
sp_v2.0_unigene81327 SustainPine v2.0 686
AutoFact: Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] dbj|BAB09284.1| unnamed protein product [Arabidopsis thaliana] gb|AED96710.1| Got1/Sft2-like vescicle transport protein [Arabidopsis thaliana] 4.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: sft2 protein 8.38257e-42
C-terminus
sp_v2.0_unigene81339 SustainPine v2.0 765
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 5.0e-20
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: protein 2.64476e-24
Putative Complete
sp_v2.0_unigene81404 SustainPine v2.0 536
AutoFact: uncharacterized protein [Arabidopsis thaliana] gb|AAK95319.1|AF410333_1 AT3g62730/F26K9_160 [Arabidopsis thaliana] emb|CAB83123.1| putative protein [Arabidopsis thaliana] gb|AAM10351.1| AT3g62730/F26K9_160 [Arabidopsis thaliana] gb|AEE80385.1| uncharacter 1.0e-20
FL-Next: sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum. 0.0
Blast2go: desiccation-related protein pcc13-62-like 9.54359e-24
C-terminus
sp_v2.0_unigene81765 SustainPine v2.0 460
AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine-rich rna-binding protein 6.78811e-27
N-terminus
sp_v2.0_unigene81787 SustainPine v2.0 562
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 3.73719e-15
C-terminus
sp_v2.0_unigene81949 SustainPine v2.0 1052
AutoFact: Herpes_gp2 multi-domain protein 6.0e-06
Coding
sp_v2.0_unigene81979 SustainPine v2.0 517
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 4.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 4.27312e-41
N-terminus
sp_v2.0_unigene82211 SustainPine v2.0 587
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v2.0_unigene82370 SustainPine v2.0 555
AutoFact: FAP multi-domain protein 7.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 3.69424e-13
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain