Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene77323 SustainPine v2.0 518
AutoFact: Ninja-family protein AFP3 [Arabidopsis thaliana] ref|NP_001030794.1| Ninja-family protein AFP3 [Arabidopsis thaliana] ref|NP_001078222.1| Ninja-family protein AFP3 [Arabidopsis thaliana] sp|Q94F39.1|AFP3_ARATH RecName: Full=Ninja-family protein AFP3; AltN 4.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ninja-family protein afp3 7.75095e-28
Putative Complete
sp_v2.0_unigene77389 SustainPine v2.0 413
AutoFact: Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum] 5.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich splicing factor rsp41 2.22733e-15
N-terminus
sp_v2.0_unigene77498 SustainPine v2.0 249
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: unnamed protein product [Vitis vinifera] 5.90657e-08
N-terminus
sp_v2.0_unigene77514 SustainPine v2.0 494
AutoFact: Filament_head multi-domain protein 1.0e-07
Coding
sp_v2.0_unigene77515 SustainPine v2.0 607
AutoFact: DNA-damage-repair/toleration protein DRT111 [Arabidopsis thaliana] sp|P42698.2|DR111_ARATH RecName: Full=DNA-damage-repair/toleration protein DRT111, chloroplastic; Flags: Precursor gb|AAF19751.1|AC009917_10 Strong similarity to gi|1169200 DNA-Damage-Repa 4.0e-36
FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-damage-repair toleration protein drt111 0.0
C-terminus
sp_v2.0_unigene77533 SustainPine v2.0 532
AutoFact: putative RNA-binding protein RBP37 [Oryza sativa Japonica Group] dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group] dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza s 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 7.46344e-32
Internal
sp_v2.0_unigene77555 SustainPine v2.0 372
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 3.1399e-21
N-terminus
sp_v2.0_unigene77732 SustainPine v2.0 552
AutoFact: Unassigned protein
Coding
sp_v2.0_unigene77773 SustainPine v2.0 754
AutoFact: NTF2 domain containing protein 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: low quality protein: g3bp-like 0.0
N-terminus
sp_v2.0_unigene77932 SustainPine v2.0 341
AutoFact: RRM_1 multi-domain protein 2.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: oligouridylate binding protein 1b 2.26852e-24
Internal
sp_v2.0_unigene77949 SustainPine v2.0 493
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heterogeneous nuclear 1.91978e-43
Putative N-terminus
sp_v2.0_unigene78078 SustainPine v2.0 391
AutoFact: putative DNA binding protein [Trifolium pratense] 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding post-transcriptional regulator csx1-like 3.27096e-22
Putative C-terminus
sp_v2.0_unigene78283 SustainPine v2.0 383
AutoFact: DNA-damage repair protein drt111, putative n=1 Tax=Ricinus communis RepID=B9SB37_RICCO 2.0e-08
FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v2.0_unigene78333 SustainPine v2.0 380
AutoFact: polypyrimidine tract-binding protein 2 [Arabidopsis thaliana] sp|Q9FGL9.1|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2 dbj|BAB08421.1| polypyrimidine tract-binding RNA transport protein-like [Arabidopsis thaliana] gb|AAU90050.1 3.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hypothetical protein VITISV_013673 [Vitis vinifera] 5.20009e-07
N-terminus
sp_v2.0_unigene78509 SustainPine v2.0 815
AutoFact: Nucleotide-sugar transporter family protein [Arabidopsis thaliana] sp|Q9SUV2.1|PT432_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At4g32390 emb|CAA22566.1| putative protein [Arabidopsis thaliana] emb|CAB79956.1| putative protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleotide-sugar transporter family protein 0.0
Putative N-terminus
sp_v2.0_unigene78563 SustainPine v2.0 501
AutoFact: Poly(A)-binding protein n=2 Tax=Nicotiana tabacum RepID=Q9M6E6_TOBAC 3.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polyadenylate-binding protein 2-like 3.74802e-19
C-terminus
sp_v2.0_unigene78565 SustainPine v2.0 930
AutoFact: RNA-binding protein, putative [Musa acuminata] 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Putative C-terminus
sp_v2.0_unigene78570 SustainPine v2.0 707
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein with multiple splicing 9.22585e-40
N-terminus
sp_v2.0_unigene78665 SustainPine v2.0 500
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 1.0188e-32
C-terminus
sp_v2.0_unigene78711 SustainPine v2.0 461
AutoFact: RecName: Full=Glycine-rich RNA-binding protein 10 emb|CAA78513.1| glycine-rich RNA binding protein [Brassica napus] 3.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine-rich rna-binding protein 8 3.81263e-21
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain