Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Zinc finger, PHD-type

Term: IPR001965  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene34221 SustainPine v2.0 409
AutoFact: Ankyrin like protein n=1 Tax=Zea mays RepID=B6U4R6_MAIZE 4.00001e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable methyltransferase pmt7-like 0.0
Internal
sp_v2.0_unigene34270 SustainPine v2.0 349
AutoFact: putative E3 ubiquitin-protein ligase ORTHRUS 4 [Arabidopsis thaliana] sp|Q9C8E1.1|ORTH4_ARATH RecName: Full=Putative E3 ubiquitin-protein ligase ORTHRUS 4; AltName: Full=Protein VARIANT IN METHYLATION 4 gb|AAG51294.1|AC026480_1 RING zinc finger protein, p 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: e3 ubiquitin-protein ligase orthrus 2 4.91501e-21
N-terminus
sp_v2.0_unigene34341 SustainPine v2.0 483
AutoFact: PHD-finger, putative [Oryza sativa Japonica Group] gb|ABA92921.1| PHD-finger family protein, expressed [Oryza sativa Japonica Group] 1.0e-09
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 1.77753e-11
Internal
sp_v2.0_unigene34488 SustainPine v2.0 521
AutoFact: Unassigned protein
FL-Next: sp=Protein VERNALIZATION INSENSITIVE 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein vernalization insensitive 3-like 3.33384e-37
Internal
sp_v2.0_unigene34604 SustainPine v2.0 503
AutoFact: pfam12998, ING, Inhibitor of growth proteins N-terminal histone-binding 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: phd finger protein 5.54409e-31
N-terminus
sp_v2.0_unigene35007 SustainPine v2.0 687
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SH81_RICCO 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 8.65302e-42
C-terminus
sp_v2.0_unigene35073 SustainPine v2.0 789
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: atp binding 1.58881e-25
C-terminus
sp_v2.0_unigene35798 SustainPine v2.0 614
AutoFact: PHD multi-domain protein 3.0e-09
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 4.1058e-43
Internal
sp_v2.0_unigene36330 SustainPine v2.0 861
AutoFact: Ebs-bah-phd domain-containing protein n=7 Tax=Magnoliophyta RepID=B9IAJ0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ebs-bah-phd domain-containing protein 0.0
Complete
sp_v2.0_unigene36400 SustainPine v2.0 1006
AutoFact: E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] ref|NP_001119465.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb|AED97324.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb|AED97328.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] 0.0
FL-Next: sp=E3 SUMO-protein ligase SIZ1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: e3 sumo-protein ligase siz1 0.0
Internal
sp_v2.0_unigene36555 SustainPine v2.0 889
AutoFact: histone-lysine N-methyltransferase ASHR3 [Arabidopsis thaliana] sp|Q949T8.1|ASHR3_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHR3; AltName: Full=ASH1-related protein 3; AltName: Full=Protein SET DOMAIN GROUP 4; AltName: Full=Protein stamen lo 3.0e-38
FL-Next: sp=Histone-lysine N-methyltransferase ASHR3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: histone-lysine n-methyltransferase ashr3 0.0
N-terminus
sp_v2.0_unigene36722 SustainPine v2.0 641
AutoFact: Histone acetyltransferase HAC1 n=4 Tax=Arabidopsis RepID=HAC1_ARATH 4.0e-30
FL-Next: sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: histone acetyltransferase 6.08289e-33
C-terminus
sp_v2.0_unigene36813 SustainPine v2.0 563
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTY5_RICCO 0.0
FL-Next: sp=Probable chromatin-remodeling complex ATPase chain; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
sp_v2.0_unigene37046 SustainPine v2.0 722
AutoFact: histone-lysine N-methyltransferase ATX1 [Arabidopsis thaliana] sp|Q9C5X4.2|ATX1_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX1; AltName: Full=Protein SET DOMAIN GROUP 27; AltName: Full=Trithorax-homolog protein 1; Short=TRX-homolog protein 1 0.0
FL-Next: Isoform 2 of Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 0.0
Blast2go: histone-lysine n-methyltransferase atx2-like 0.0
Internal
sp_v2.0_unigene37063 SustainPine v2.0 314
AutoFact: RecQ-like helicase 2 [Oryza sativa Japonica Group] 9.80909e-45
FL-Next: Isoform 2 of ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana GN=RECQL2 0.0
Blast2go: atp-dependent dna family expressed 0.0
Internal
sp_v2.0_unigene37314 SustainPine v2.0 430
AutoFact: cohesin loading factor subunit SCC2 [Arabidopsis thaliana] gb|ABQ12620.1| sister chromatid cohesion 2 [Arabidopsis thaliana] gb|AED92174.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] 3.0e-22
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: cohesin loading factor subunit scc2 3.05588e-26
Internal
sp_v2.0_unigene37431 SustainPine v2.0 516
AutoFact: PREDICTED: similar to SNF2 histone linker PHD RING helicase [Gallus gallus] 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: e3 ubiquitin-protein ligase shprh-like 3.14989e-37
Internal
sp_v2.0_unigene37852 SustainPine v2.0 559
AutoFact: Putative kinesin-related protein [Oryza sativa Japonica Group] gb|ABF93545.1| expressed protein [Oryza sativa Japonica Group] 4.0e-25
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dna repair protein 1.87471e-34
Internal
sp_v2.0_unigene37899 SustainPine v2.0 506
AutoFact: JmjC domain containing protein 7.0e-36
FL-Next: sp=Probable lysine-specific demethylase ELF6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: jumonji domain protein 0.0
Internal
sp_v2.0_unigene37941 SustainPine v2.0 361
AutoFact: SNF2 family DNA-dependent ATPase (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TI22_PHYPA 5.0e-34
FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: snf2 family dna-dependent atpase 1.11363e-33
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain