Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: DNA/RNA helicase, DEAD/DEAH box type, N-terminal

Term: IPR011545  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene39049 SustainPine v2.0 214
AutoFact: [L] COG4581 Superfamily II RNA helicase 3.0e-11
FL-Next: sp=DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dead-box atp-dependent rna helicase chloroplastic-like 9.83692e-26
Internal
sp_v2.0_unigene39214 SustainPine v2.0 647
AutoFact: ATP-dependent RNA helicase A-like protein n=2 Tax=Arabidopsis RepID=Q9FF84_ARATH 4.0e-24
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: probable atp-dependent rna helicase dhx36-like 7.44744e-31
N-terminus
sp_v2.0_unigene39583 SustainPine v2.0 322
AutoFact: DNA polymerase theta, putative n=1 Tax=Ricinus communis RepID=B9RS63_RICCO 6.0e-26
FL-Next: tr=DNA polymerase theta, putative; Ricinus communis (Castor bean). 0.0
Blast2go: protein 1.18818e-25
Internal
sp_v2.0_unigene39790 SustainPine v2.0 507
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO 6.0e-31
FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 0.0
Blast2go: dicer-like protein 3.31938e-36
N-terminus
sp_v2.0_unigene40433 SustainPine v2.0 296
AutoFact: Helicase, putative n=1 Tax=Ricinus communis RepID=B9S370_RICCO 9.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene40476 SustainPine v2.0 350
AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: u5 small nuclear ribonucleoprotein helicase 0.0
Internal
sp_v2.0_unigene40547 SustainPine v2.0 410
AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U0S9_PHYPA 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: helicase ski2w-like 2.84963e-37
Internal
sp_v2.0_unigene40751 SustainPine v2.0 301
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 22 7.0e-31
FL-Next: Isoform 2 of DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica GN=Os09g0383400 0.0
Blast2go: dead-box atp-dependent rna helicase 22 1.08495e-37
Internal
sp_v2.0_unigene41162 SustainPine v2.0 451
AutoFact: HUA enhancer 2 [Arabidopsis thaliana] 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: hua enhancer 2 8.21471e-18
N-terminus
sp_v2.0_unigene41264 SustainPine v2.0 338
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710 emb|CAB66909.1| putative protein [Arabidopsis thaliana] gb|AEE78579.1| pentatricopeptide repeat- 9.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein at2g13600 1.22614e-42
Internal
sp_v2.0_unigene41588 SustainPine v2.0 435
AutoFact: PREDICTED: similar to ATP-dependent helicase n=1 Tax=Vitis vinifera RepID=UPI00019836E3 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v2.0_unigene41617 SustainPine v2.0 507
AutoFact: DEAD-box ATP-dependent RNA helicase ISE2 [Arabidopsis thaliana] sp|B9DFG3.2|ISE2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 25; AltName: Full=Protein INCREASED SIZE EXCLUSION LIMIT 2 8.40779e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase chloroplastic-like 0.0
Putative N-terminus
sp_v2.0_unigene42131 SustainPine v2.0 486
AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: endoribonuclease dicer homolog 1-like 0.0
Internal
sp_v2.0_unigene42650 SustainPine v2.0 372
AutoFact: DEAD-box ATP-dependent RNA helicase 41 n=4 Tax=Oryza sativa RepID=RH41_ORYSJ 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 41 4.2039e-45
Internal
sp_v2.0_unigene43178 SustainPine v2.0 303
AutoFact: DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] dbj|BAB11511.1| ATP-dependent RNA helicase A-like protein [Arabidopsis thaliana] gb|AED90801.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] 5.0e-33
FL-Next: tr=ATP-dependent RNA helicase A-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dea(d h)-box rna helicase family protein 2.46981e-33
Internal
sp_v2.0_unigene43308 SustainPine v2.0 411
AutoFact: [L] COG0514 Superfamily II DNA helicase 4.0e-23
FL-Next: Isoform 2 of ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana GN=RECQL2 0.0
Blast2go: werner syndrome atp-dependent helicase homolog 0.0
Internal
sp_v2.0_unigene43411 SustainPine v2.0 449
AutoFact: dicer-like protein 4 [Arabidopsis thaliana] sp|P84634.2|DCL4_ARATH RecName: Full=Dicer-like protein 4 gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana] gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana] 1.0e-23
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dicer-like protein 4 2.33489e-34
Internal
sp_v2.0_unigene44079 SustainPine v2.0 473
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_191.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7TRM5_VITVI 3.00004e-41
FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: at4g01020-like protein 0.0
Internal
sp_v2.0_unigene44120 SustainPine v2.0 302
AutoFact: U520, putative n=2 Tax=rosids RepID=B9RY79_RICCO 0.0
FL-Next: tr=U520, putative; Ricinus communis (Castor bean). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene44131 SustainPine v2.0 351
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9RQZ1_RICCO 3.0e-34
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: endoribonuclease dicer homolog 3a-like 1.29344e-39
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain