Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: DNA/RNA helicase, DEAD/DEAH box type, N-terminal

Term: IPR011545  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene23580 SustainPine v2.0 1993
• AutoFact: DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] ref|NP_568244.2| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] sp|Q9LFN6.2|RH56_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 56 sp|Q56XG6.3|RH15_ARATH RecName: Full=D 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 56 0.0
Complete
sp_v2.0_unigene24412 SustainPine v2.0 464
• AutoFact: translational initiation factor eIF-4A [Zea mays] gb|AAB67607.1| translational initiation factor eIF-4A [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: eukaryotic initiation factor 4a 0.0
Internal
sp_v2.0_unigene25108 SustainPine v2.0 683
• AutoFact: putative DEAD/H box polypeptide 36 protein [Oryza sativa Japonica Group] 1.0e-28
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: atp-dependent rna helicase a-like protein 1.35295e-40
Putative N-terminus
sp_v2.0_unigene25310 SustainPine v2.0 2112
• AutoFact: CAF protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: endoribonuclease dicer 0.0
C-terminus
sp_v2.0_unigene25478 SustainPine v2.0 1807
• AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 0.0
Complete
sp_v2.0_unigene25605 SustainPine v2.0 437
• AutoFact: GRP multi-domain protein 4.0e-12
Coding
sp_v2.0_unigene26080 SustainPine v2.0 1301
• AutoFact: putative DEAD-box protein abstrakt [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box protein abstrakt 0.0
C-terminus
sp_v2.0_unigene26090 SustainPine v2.0 1033
• AutoFact: DEAD-box ATP-dependent RNA helicase 37 n=2 Tax=Oryza sativa Japonica Group RepID=RH37_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 37-like 0.0
Internal
sp_v2.0_unigene26176 SustainPine v2.0 666
• AutoFact: Helicase, putative n=1 Tax=Ricinus communis RepID=B9SPB9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: superkiller viralicidic activity 2-like 2-like 0.0
Putative C-terminus
sp_v2.0_unigene26505 SustainPine v2.0 907
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 8.0e-30
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: glycine-rich rna-binding protein 1.60522e-29
Complete
sp_v2.0_unigene27282 SustainPine v2.0 2941
• AutoFact: RNA helicase n=1 Tax=Vigna radiata var. radiata RepID=Q9M6R6_VIGRR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 7-like 0.0
Putative C-terminus
sp_v2.0_unigene27561 SustainPine v2.0 999
• AutoFact: Rothmund-thomson syndrome DNA helicase recq4, putative n=1 Tax=Ricinus communis RepID=B9RMM3_RICCO 9.0e-28
• FL-Next: sp=ATP-dependent DNA helicase Q-like 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: atp-dependent dna helicase q-like 5-like 5.77618e-30
C-terminus
sp_v2.0_unigene27762 SustainPine v2.0 926
• AutoFact: DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] ref|NP_568244.2| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] sp|Q9LFN6.2|RH56_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 56 sp|Q56XG6.3|RH15_ARATH RecName: Full=D 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 56 1.93803e-27
Putative N-terminus
sp_v2.0_unigene28011 SustainPine v2.0 2251
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative Complete
sp_v2.0_unigene28307 SustainPine v2.0 3044
• AutoFact: DEAD BOX RNA helicase RH15-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene28419 SustainPine v2.0 1042
• AutoFact: Endoribonuclease Dicer homolog 1 n=4 Tax=Poaceae RepID=DCL1_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: endoribonuclease dicer homolog 1-like 0.0
Putative Complete
sp_v2.0_unigene28858 SustainPine v2.0 1772
• AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 0.0
N-terminus
sp_v2.0_unigene28865 SustainPine v2.0 469
• AutoFact: U520, putative n=2 Tax=rosids RepID=B9RY79_RICCO 0.0
• FL-Next: tr=U520, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: u5 small nuclear ribonucleoprotein helicase 0.0
Internal
sp_v2.0_unigene29068 SustainPine v2.0 336
• AutoFact: DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] dbj|BAB11511.1| ATP-dependent RNA helicase A-like protein [Arabidopsis thaliana] gb|AED90801.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] 2.0e-10
• FL-Next: tr=ATP binding protein, putative, expressed; Triticum aestivum (Wheat). 0.0
• Blast2go: dea(d h)-box rna helicase family protein 9.78615e-13
C-terminus
sp_v2.0_unigene29111 SustainPine v2.0 857
• AutoFact: U520, putative n=2 Tax=rosids RepID=B9RY79_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u5 small nuclear ribonucleoprotein helicase 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain