Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Helicase, C-terminal

Term: IPR001650  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene2713 SustainPine v2.0 871
AutoFact: zinc finger-related and helicase and IBR domain-containing protein [Arabidopsis thaliana] sp|P0CE10.1|Y4102_ARATH RecName: Full=Putative uncharacterized protein At4g01020, chloroplastic; Flags: Precursor gb|AEE81967.1| zinc finger-related and helicase and 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein chloroplastic-like 0.0
Internal
sp_v2.0_unigene2926 SustainPine v2.0 3231
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Complete
sp_v2.0_unigene2956 SustainPine v2.0 3186
AutoFact: Glutenin_hmw multi-domain protein 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rdd domain-containing protein 0.0
Complete
sp_v2.0_unigene3012 SustainPine v2.0 2356
AutoFact: pfam00270, DEAD, DEAD/DEAH box helicase 0.0
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 10; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene3117 SustainPine v2.0 1392
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 42-like 0.0
C-terminus
sp_v2.0_unigene3198 SustainPine v2.0 2764
AutoFact: DEAD box protein P68 [Pisum sativum] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene3374 SustainPine v2.0 1726
AutoFact: ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 6301] ref|YP_400096.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 7942] dbj|BAD78660.1| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 6301] gb|ABB57109.1| ATP-de 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent dna helicase 0.0
Complete
sp_v2.0_unigene3408 SustainPine v2.0 1581
AutoFact: putative Helicase SKI2W [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene3452 SustainPine v2.0 3647
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 8 dbj|BAD25226.1| putative RNA helicase [Oryza sativa Japonica Group] dbj|BAG92832.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE57460.1| hypothetical protein OsJ_07688 [Oryza sativa Japon 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 8-like 0.0
Complete
sp_v2.0_unigene3482 SustainPine v2.0 2385
AutoFact: putative RNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: activating signal cointegrator 1 complex subunit 0.0
Complete
sp_v2.0_unigene3729 SustainPine v2.0 1228
AutoFact: SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gb|AAD22300.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06492.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana] 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: snf2 family dna-dependent atpase 1.72025e-30
Putative C-terminus
sp_v2.0_unigene3792 SustainPine v2.0 1634
AutoFact: asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb|AAD4 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: asparaginyl-trna cytoplasmic 1-like 0.0
C-terminus
sp_v2.0_unigene3803 SustainPine v2.0 1160
AutoFact: putative helicase [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-like helicase domain-containing protein 0.0
Putative C-terminus
sp_v2.0_unigene4020 SustainPine v2.0 1260
AutoFact: putative ATP-dependent RNA helicase [Oryza sativa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 17-like 0.0
Internal
sp_v2.0_unigene4024 SustainPine v2.0 2996
AutoFact: DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] gb|AAM26693.1| At5g26743 [Arabidopsis thaliana] gb|AAO42779.1| At5g26743 [Arabidopsis thaliana] gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase chloroplastic-like 0.0
Complete
sp_v2.0_unigene4163 SustainPine v2.0 1124
AutoFact: ATP-dependent RNA and DNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SEF1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: atp-dependent rna helicase mitochondrial-like 0.0
Putative C-terminus
sp_v2.0_unigene4164 SustainPine v2.0 2072
AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 6.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: helicase and zinc finger domain-containing protein 0.0
Putative Complete
sp_v2.0_unigene4221 SustainPine v2.0 1032
AutoFact: ATP-dependent helicase BRM n=6 Tax=Camelineae RepID=BRM_ARATH 0.0
FL-Next: Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM 0.0
Blast2go: atp-dependent helicase brm 0.0
Internal
sp_v2.0_unigene4238 SustainPine v2.0 473
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: snf2 family dna-dependent atpase 7.98353e-28
Internal
sp_v2.0_unigene4239 SustainPine v2.0 2470
AutoFact: DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb|AEE74400.1| DEAD-box ATP-dependent RNA heli 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 14 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain