Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Double-stranded RNA-binding

Term: IPR001159  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene37971 SustainPine v2.0 304
AutoFact: Isoform 2 of Endoribonuclease Dicer homolog 4 n=1 Tax=Oryza sativa Japonica Group RepID=A7LFZ6-2 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 1.05491e-38
Internal
sp_v2.0_unigene38226 SustainPine v2.0 441
AutoFact: protein dicer-like 3 [Arabidopsis thaliana] emb|CAB88120.1| putative protein [Arabidopsis thaliana] gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana] gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana] 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein dicer-like 3 7.88203e-23
Internal
sp_v2.0_unigene38255 SustainPine v2.0 331
AutoFact: Unassigned protein
FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii c-terminal domain phosphatase-like 2 0.0
Internal
sp_v2.0_unigene38644 SustainPine v2.0 232
AutoFact: sap92f01.y1 Gm-c1045 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1045-2929 5' similar to TR:Q9SVT0 Q9SVT0 HYPOTHETICAL 111.8 KD PROTEIN. ;, mRNA sequence. 9.0e-14
FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii c-terminal domain phosphatase-like 1-like 6.43984e-18
Internal
sp_v2.0_unigene39214 SustainPine v2.0 647
AutoFact: ATP-dependent RNA helicase A-like protein n=2 Tax=Arabidopsis RepID=Q9FF84_ARATH 4.0e-24
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: probable atp-dependent rna helicase dhx36-like 7.44744e-31
N-terminus
sp_v2.0_unigene39590 SustainPine v2.0 708
AutoFact: dsRNA-binding protein 2 [Arabidopsis thaliana] sp|Q9SKN2.1|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName: Full=dsRNA-binding protein 2; Short=AtDRB2 gb|AAD20688.1| expressed protein [Arabidopsis thaliana] gb|AAK59481.1| unknown p 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: double-stranded rna-binding protein 2-like 1.31445e-37
Internal
sp_v2.0_unigene39790 SustainPine v2.0 507
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO 6.0e-31
FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 0.0
Blast2go: dicer-like protein 3.31938e-36
N-terminus
sp_v2.0_unigene40527 SustainPine v2.0 404
AutoFact: double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata] 1.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: double-stranded rna-binding protein 2-like 0.0
N-terminus
sp_v2.0_unigene42131 SustainPine v2.0 486
AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: endoribonuclease dicer homolog 1-like 0.0
Internal
sp_v2.0_unigene43114 SustainPine v2.0 384
AutoFact: Double-stranded RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZ63_RICCO 0.0
FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii c-terminal domain phosphatase-like 1-like 0.0
Internal
sp_v2.0_unigene43178 SustainPine v2.0 303
AutoFact: DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] dbj|BAB11511.1| ATP-dependent RNA helicase A-like protein [Arabidopsis thaliana] gb|AED90801.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] 5.0e-33
FL-Next: tr=ATP-dependent RNA helicase A-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dea(d h)-box rna helicase family protein 2.46981e-33
Internal
sp_v2.0_unigene43411 SustainPine v2.0 449
AutoFact: dicer-like protein 4 [Arabidopsis thaliana] sp|P84634.2|DCL4_ARATH RecName: Full=Dicer-like protein 4 gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana] gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana] 1.0e-23
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dicer-like protein 4 2.33489e-34
Internal
sp_v2.0_unigene43468 SustainPine v2.0 423
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO 4.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 4 1.54766e-33
Internal
sp_v2.0_unigene44079 SustainPine v2.0 473
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_191.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7TRM5_VITVI 3.00004e-41
FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: at4g01020-like protein 0.0
Internal
sp_v2.0_unigene44131 SustainPine v2.0 351
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9RQZ1_RICCO 3.0e-34
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: endoribonuclease dicer homolog 3a-like 1.29344e-39
Internal
sp_v2.0_unigene44622 SustainPine v2.0 226
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S355_RICCO 3.0e-27
FL-Next: tr=ATP-dependent RNA helicase, putative; Ricinus communis (Castor bean). 0.0
Blast2go: probable atp-dependent rna helicase dhx36-like 2.74675e-32
Internal
sp_v2.0_unigene45297 SustainPine v2.0 373
AutoFact: RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: endoribonuclease dicer homolog 1-like 0.0
Internal
sp_v2.0_unigene45543 SustainPine v2.0 424
AutoFact: dicer-like protein [Oryza sativa Indica Group] 3.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: endoribonuclease dicer homolog 3a-like 1.12396e-38
Internal
sp_v2.0_unigene47870 SustainPine v2.0 300
AutoFact: CAF protein [Arabidopsis thaliana] 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 1.65465e-25
N-terminus
sp_v2.0_unigene48177 SustainPine v2.0 426
AutoFact: putative ATP-dependent RNA helicase [Oryza sativa Japonica Group] 6.0e-07
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: probable atp-dependent rna helicase ythdc2-like 3.76572e-17
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain