Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Double-stranded RNA-binding

Term: IPR001159  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene27319 SustainPine v2.0 1169
AutoFact: transducin/WD-40 repeat protein [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Regulatory-associated protein of TOR 2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene27583 SustainPine v2.0 1906
AutoFact: RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 4 0.0
C-terminus
sp_v2.0_unigene28011 SustainPine v2.0 2251
AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
sp_v2.0_unigene28183 SustainPine v2.0 283
AutoFact: cell wall beta-glucosidase [Secale cereale] 8.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycosyl hydrolase family 3 n terminal domain containing expressed 1.681e-28
C-terminus
sp_v2.0_unigene28291 SustainPine v2.0 1840
AutoFact: Double-stranded RNA-binding domain (DsRBD)-containing protein-like n=2 Tax=Oryza sativa RepID=Q6H5U8_ORYSJ 0.0
FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii c-terminal domain phosphatase-like 1-like 0.0
Putative C-terminus
sp_v2.0_unigene28419 SustainPine v2.0 1042
AutoFact: Endoribonuclease Dicer homolog 1 n=4 Tax=Poaceae RepID=DCL1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: endoribonuclease dicer homolog 1-like 0.0
Putative Complete
sp_v2.0_unigene28912 SustainPine v2.0 624
AutoFact: beta-glucosidase [Arabidopsis thaliana] emb|CAB61946.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gb|AAL32794.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gb|AAM13345.1| beta-D-glucan exohydrolase-like protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: beta-d-glucan exohydrolase-like protein 0.0
Internal
sp_v2.0_unigene29068 SustainPine v2.0 336
AutoFact: DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] dbj|BAB11511.1| ATP-dependent RNA helicase A-like protein [Arabidopsis thaliana] gb|AED90801.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] 2.0e-10
FL-Next: tr=ATP binding protein, putative, expressed; Triticum aestivum (Wheat). 0.0
Blast2go: dea(d h)-box rna helicase family protein 9.78615e-13
C-terminus
sp_v2.0_unigene29317 SustainPine v2.0 715
AutoFact: ATP-dependant RNA helicase [Plasmodium vivax SaI-1] gb|EDL44982.1| ATP-dependant RNA helicase, putative [Plasmodium vivax] 2.8026e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent rna helicase dhx8 0.0
N-terminus
sp_v2.0_unigene29728 SustainPine v2.0 698
AutoFact: Putative helicase n=1 Tax=Oryza sativa RepID=Q8W302_ORYSA 7.0e-17
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: probable atp-dependent rna helicase dhx36-like 1.73412e-18
N-terminus
sp_v2.0_unigene30192 SustainPine v2.0 425
AutoFact: dsRNA-binding protein 3 [Arabidopsis thaliana] ref|NP_001030779.2| dsRNA-binding protein 3 [Arabidopsis thaliana] sp|Q9LJF5.1|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName: Full=dsRNA-binding protein 3; Short=AtDRB3 dbj|BAB01188. 5.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dsrna-binding protein 3 4.52783e-14
N-terminus
sp_v2.0_unigene31255 SustainPine v2.0 641
AutoFact: RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana] ref|NP_001190782.1| RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana] sp|Q9C5Q8.1|HEN1_ARATH RecName: Full=Small RNA 2'-O-methyltransferase; AltName: Full=Protein CORYMBOSA 2; AltName: Full=Protein HUA 7.00649e-44
FL-Next: sp=Small RNA 2'-O-methyltransferase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: small rna 2 -o-methyltransferase-like 0.0
Internal
sp_v2.0_unigene32372 SustainPine v2.0 321
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: endoribonuclease dicer 0.0
Internal
sp_v2.0_unigene32875 SustainPine v2.0 505
AutoFact: regulatory associated protein of mTOR [Arabidopsis thaliana] sp|Q93YQ1.1|RTOR1_ARATH RecName: Full=Regulatory-associated protein of TOR 1; AltName: Full=Protein RAPTOR 1; AltName: Full=Protein RAPTOR 1B; Short=AtRaptor1b gb|AAL24320.1| Unknown protein [Ar 2.0e-06
FL-Next: sp=Regulatory-associated protein of TOR 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: regulatory-associated protein of mtor 2.18518e-09
N-terminus
sp_v2.0_unigene34588 SustainPine v2.0 705
AutoFact: Exhydrolase II n=1 Tax=Zea mays RepID=Q9XE93_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: beta-d-glucan exohydrolase-like protein 0.0
Internal
sp_v2.0_unigene34889 SustainPine v2.0 801
AutoFact: double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dsrna-binding protein 3 0.0
Putative N-terminus
sp_v2.0_unigene35829 SustainPine v2.0 882
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 1.17004e-32
C-terminus
sp_v2.0_unigene36201 SustainPine v2.0 758
AutoFact: HVSL domain containing protein 7.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: upf0406 protein c16orf57 homolog 0.0
C-terminus
sp_v2.0_unigene36661 SustainPine v2.0 928
AutoFact: Fructose-bisphosphate aldolase n=3 Tax=Solanum tuberosum RepID=Q2PYX3_SOLTU 0.0
FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: fructose-bisphosphate aldolase 0.0
Putative C-terminus
sp_v2.0_unigene37797 SustainPine v2.0 430
AutoFact: DEA(D/H)-box RNA helicase family protein n=4 Tax=Arabidopsis RepID=F4HYJ6_ARATH 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable atp-dependent rna helicase dhx36-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain