Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: SMCs flexible hinge

Term: IPR010935  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene195 SustainPine v2.0 1844
AutoFact: pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain 1.0e-22
FL-Next: sp=Structural maintenance of chromosomes protein 2-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: condensin complex components subunit 0.0
Internal
sp_v2.0_unigene613 SustainPine v2.0 4187
AutoFact: putative SMC protein [Oryza sativa Japonica Group] gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v2.0_unigene786 SustainPine v2.0 1386
AutoFact: pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 2-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: condensin complex components subunit 0.0
N-terminus
sp_v2.0_unigene1137 SustainPine v2.0 1029
AutoFact: pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 2-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: structural maintenance of chromosomes protein 3-like 0.0
N-terminus
sp_v2.0_unigene3340 SustainPine v2.0 2033
AutoFact: pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: smc3 protein 0.0
Putative Complete
sp_v2.0_unigene7635 SustainPine v2.0 1119
AutoFact: structural maintenance of chromosomes (SMC) - like protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: structural maintenance of chromosomes 1 0.0
Putative N-terminus
sp_v2.0_unigene8322 SustainPine v2.0 2734
AutoFact: structural maintenance of chromosomes 1 protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: structural maintenance of chromosomes 1 0.0
Complete
sp_v2.0_unigene10048 SustainPine v2.0 1053
AutoFact: pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 3.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: condensin complex components subunit 0.0
C-terminus
sp_v2.0_unigene16693 SustainPine v2.0 844
AutoFact: Cysteine-type peptidase, putative n=1 Tax=Ricinus communis RepID=B9T2T7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin thioesterase otu1 0.0
C-terminus
sp_v2.0_unigene32733 SustainPine v2.0 519
AutoFact: pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain 8.0e-20
FL-Next: tr=Condensin complex component SMC3; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: structural maintenance of chromosomes protein 3-like 0.0
Internal
sp_v2.0_unigene36249 SustainPine v2.0 413
AutoFact: putative SMC protein [Oryza sativa Japonica Group] gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group] 9.0e-13
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: structural maintenance of chromosomes protein 4 4.60441e-15
Putative N-terminus
sp_v2.0_unigene38346 SustainPine v2.0 322
AutoFact: SMC_N domain containing protein 2.0e-06
FL-Next: tr=Structural maintenance of chromosome, putative; Ricinus communis (Castor bean). 0.0
Blast2go: chromosome associated protein 1.40117e-38
Internal
sp_v2.0_unigene61872 SustainPine v2.0 1099
AutoFact: Phosphoglycerate kinase n=1 Tax=Picea sitchensis RepID=B8LKQ1_PICSI 0.0
FL-Next: sp=Phosphoglycerate kinase; Pinus pinaster (Maritime pine). 0.0
Blast2go: phosphoglycerate kinase 0.0
N-terminus
sp_v2.0_unigene85464 SustainPine v2.0 481
AutoFact: Structural maintenance of chromosomes (SMC)-like protein n=2 Tax=Arabidopsis RepID=Q9M1T3_ARATH 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: structural maintenance of chromosomes 1 5.76214e-42
Internal
sp_v2.0_unigene85919 SustainPine v2.0 603
AutoFact: putative SMC protein [Oryza sativa Japonica Group] gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: structural maintenance of chromosomes protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain