Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA polymerase III, subunit Rpc25

Term: IPR013238  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene2923 SustainPine v2.0 1193
AutoFact: RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana] gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana] gb|AAN13199.1| putative RNA polymerase [Ara 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene16107 SustainPine v2.0 1550
AutoFact: S-adenosylmethionine synthase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJH4_PHYPA 0.0
FL-Next: sp=S-adenosylmethionine synthase 1; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosylmethionine synthase-like isoform 1 0.0
C-terminus
sp_v2.0_unigene16410 SustainPine v2.0 1060
AutoFact: S-adenosylmethionine synthase 1 n=12 Tax=Spermatophyta RepID=METK1_HORVU 0.0
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosyl-l-methionine synthetase 0.0
N-terminus
sp_v2.0_unigene20925 SustainPine v2.0 310
AutoFact: S-adenosylmethionine synthetase [Pinus sylvestris] 7.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosylmethionine synthetase 6.60402e-19
N-terminus
sp_v2.0_unigene23716 SustainPine v2.0 197
AutoFact: S-adenosylmethionine synthetase [Pinus sylvestris] 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Misassembled
sp_v2.0_unigene24339 SustainPine v2.0 522
AutoFact: S-adenosylmethionine synthase 1 n=116 Tax=Spermatophyta RepID=METK1_ARATH 0.0
FL-Next: sp=S-adenosylmethionine synthase 3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosyl methionine synthetase 0.0
Internal
sp_v2.0_unigene34266 SustainPine v2.0 472
AutoFact: RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana] gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana] gb|AAN13199.1| putative RNA polymerase [Ara 8.0e-14
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 1.88383e-30
C-terminus
sp_v2.0_unigene60692 SustainPine v2.0 1325
AutoFact: S-adenosylmethionine synthase 1 n=116 Tax=Spermatophyta RepID=METK1_ARATH 0.0
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosylmethionine synthetase 0.0
C-terminus
sp_v2.0_unigene78499 SustainPine v2.0 951
AutoFact: S-adenosylmethionine synthase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TIR8_VITVI 0.0
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosyl methionine synthetase 0.0
C-terminus
sp_v2.0_unigene81958 SustainPine v2.0 500
AutoFact: S-adenosylmethionine synthase 1 n=12 Tax=Spermatophyta RepID=METK1_HORVU 0.0
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosyl methionine synthetase 0.0
Internal
sp_v2.0_unigene82041 SustainPine v2.0 632
AutoFact: S-adenosylmethionine synthase 1 n=12 Tax=Spermatophyta RepID=METK1_HORVU 0.0
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosylmethionine synthetase 0.0
Internal
sp_v2.0_unigene82451 SustainPine v2.0 543
AutoFact: S-adenosylmethionine synthase 1 n=12 Tax=Spermatophyta RepID=METK1_HORVU 0.0
FL-Next: sp=S-adenosylmethionine synthase 2; Pinus contorta (Shore pine) (Lodgepole pine). 0.0
Blast2go: s-adenosyl methionine synthetase 0.0
Internal
sp_v2.0_unigene82523 SustainPine v2.0 1001
AutoFact: S-adenosyl-L-methionine synthetase (Fragment) n=2 Tax=Magnoliophyta RepID=A0SE31_ANNCH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosylmethionine synthetase 0.0
Complete
sp_v2.0_unigene82598 SustainPine v2.0 712
AutoFact: S-adenosylmethionine synthetase (Fragment) n=1 Tax=Dendrobium hybrid cultivar RepID=A4GKJ0_9ASPA 0.0
FL-Next: sp=S-adenosylmethionine synthase 2; Pinus contorta (Shore pine) (Lodgepole pine). 0.0
Blast2go: s-adenosylmethionine synthetase 0.0
Putative N-terminus
sp_v2.0_unigene92268 SustainPine v2.0 552
AutoFact: S-adenosylmethionine synthase 1 n=5 Tax=core eudicotyledons RepID=METK1_DAUCA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosylmethionine synthetase 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain