Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA polymerase Rpb7, N-terminal

Term: IPR005576  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene2923 SustainPine v2.0 1193
AutoFact: RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana] gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana] gb|AAN13199.1| putative RNA polymerase [Ara 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene10997 SustainPine v2.0 1410
AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SDY6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: l-type lectin-domain containing receptor kinase -like 0.0
Internal
sp_v2.0_unigene13921 SustainPine v2.0 1787
AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
Complete
sp_v2.0_unigene16107 SustainPine v2.0 1550
AutoFact: S-adenosylmethionine synthase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJH4_PHYPA 0.0
FL-Next: sp=S-adenosylmethionine synthase 1; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosylmethionine synthase-like isoform 1 0.0
C-terminus
sp_v2.0_unigene16410 SustainPine v2.0 1060
AutoFact: S-adenosylmethionine synthase 1 n=12 Tax=Spermatophyta RepID=METK1_HORVU 0.0
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosyl-l-methionine synthetase 0.0
N-terminus
sp_v2.0_unigene20868 SustainPine v2.0 900
AutoFact: DNA-directed RNA polymerase [Arabidopsis thaliana] ref|NP_974148.1| DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AAN12946.1| unknown protein [Arabidopsis thaliana] gb|AEE35743.1| DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AEE35744.1| D 8.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-directed rna polymerase 0.0
Putative N-terminus
sp_v2.0_unigene20925 SustainPine v2.0 310
AutoFact: S-adenosylmethionine synthetase [Pinus sylvestris] 7.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosylmethionine synthetase 6.60402e-19
N-terminus
sp_v2.0_unigene23716 SustainPine v2.0 197
AutoFact: S-adenosylmethionine synthetase [Pinus sylvestris] 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Misassembled
sp_v2.0_unigene24339 SustainPine v2.0 522
AutoFact: S-adenosylmethionine synthase 1 n=116 Tax=Spermatophyta RepID=METK1_ARATH 0.0
FL-Next: sp=S-adenosylmethionine synthase 3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosyl methionine synthetase 0.0
Internal
sp_v2.0_unigene32041 SustainPine v2.0 361
AutoFact: Lectin-like receptor kinase 7 n=2 Tax=Andropogoneae RepID=B6SWU9_MAIZE 3.9937e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: l-type lectin-domain containing receptor kinase -like 0.0
Internal
sp_v2.0_unigene33491 SustainPine v2.0 670
AutoFact: lectin-like receptor kinase 7;1 [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: l-type lectin-domain containing receptor kinase -like 0.0
Internal
sp_v2.0_unigene33700 SustainPine v2.0 608
AutoFact: DNA-directed RNA polymerase [Arabidopsis thaliana] ref|NP_974148.1| DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AAN12946.1| unknown protein [Arabidopsis thaliana] gb|AEE35743.1| DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AEE35744.1| D 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-directed rna polymerase 0.0
N-terminus
sp_v2.0_unigene34266 SustainPine v2.0 472
AutoFact: RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana] gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana] gb|AAN13199.1| putative RNA polymerase [Ara 8.0e-14
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 1.88383e-30
C-terminus
sp_v2.0_unigene39176 SustainPine v2.0 524
AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SDY6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: l-type lectin-domain containing receptor kinase -like 0.0
Internal
sp_v2.0_unigene53515 SustainPine v2.0 350
AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9T428_RICCO 7.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: l-type lectin-domain containing receptor kinase -like 0.0
Internal
sp_v2.0_unigene55063 SustainPine v2.0 325
AutoFact: concanavalin A-like lectin kinase-like protein [Arabidopsis thaliana] sp|Q9M345.1|LRK42_ARATH RecName: Full=L-type lectin-domain containing receptor kinase IV.2; Short=Arabidopsis thaliana lectin-receptor kinase a4; Short=AthlecRK-a4; Short=LecRK-IV.2; Al 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene57250 SustainPine v2.0 531
AutoFact: RNA polymerase II fifth largest subunit like protein [Arabidopsis thaliana] emb|CAB78508.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis thaliana] 2.0e-30
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: dna-directed rna polymerase ii subunit g 1.97359e-41
Putative C-terminus
sp_v2.0_unigene60692 SustainPine v2.0 1325
AutoFact: S-adenosylmethionine synthase 1 n=116 Tax=Spermatophyta RepID=METK1_ARATH 0.0
FL-Next: sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosylmethionine synthetase 0.0
C-terminus
sp_v2.0_unigene62811 SustainPine v2.0 538
AutoFact: DNA-directed RNA polymerase n=4 Tax=Arabidopsis RepID=Q8H1F8_ARATH 5.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100527229 2.15064e-35
Putative N-terminus
sp_v2.0_unigene64170 SustainPine v2.0 401
AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 2.0e-07
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: dna-directed rna polymerase ii subunit rpb7 1.58558e-12
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain