Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Zinc finger, CCHC-type

Term: IPR001878  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene83733 SustainPine v2.0 545
AutoFact: Putative pol polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7G739_ORYSJ 8.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrovirus-related polyprotein 1.04168e-24
Internal
sp_v2.0_unigene83737 SustainPine v2.0 368
AutoFact: Copia-type polyprotein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCE4_CUCME 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 3.28507e-35
Internal
sp_v2.0_unigene83738 SustainPine v2.0 390
AutoFact: Polyprotein-like n=1 Tax=Solanum chilense RepID=Q9AU17_SOLCI 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 1.23065e-28
Internal
sp_v2.0_unigene83744 SustainPine v2.0 387
AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QYR7_ORYSJ 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon ty1-copia subclass 8.31534e-15
Internal
sp_v2.0_unigene84352 SustainPine v2.0 729
AutoFact: Histone H4 n=1 Tax=Camellia sinensis RepID=F4YF87_CAMSI 2.0e-39
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h4 0.0
Putative Complete
sp_v2.0_unigene84581 SustainPine v2.0 204
AutoFact: putative retroelement pol polyprotein [Arabidopsis thaliana] 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon expressed 1.26845e-21
Internal
sp_v2.0_unigene84941 SustainPine v2.0 581
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 1.0e-13
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: universal minicircle sequence binding protein 1.47095e-16
C-terminus
sp_v2.0_unigene84961 SustainPine v2.0 581
AutoFact: CCHC-type zinc knuckle protein [Arabidopsis thaliana] emb|CAB82947.1| putative protein [Arabidopsis thaliana] gb|ABP88117.1| At3g62330 [Arabidopsis thaliana] gb|AEE80339.1| CCHC-type zinc knuckle protein [Arabidopsis thaliana] 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 2.07361e-33
N-terminus
sp_v2.0_unigene85419 SustainPine v2.0 1027
AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 1 0.0
Putative C-terminus
sp_v2.0_unigene85494 SustainPine v2.0 531
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RZN5_RICCO 9.80909e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v2.0_unigene85750 SustainPine v2.0 358
AutoFact: 5'->3' exoribonuclease, putative n=1 Tax=Ricinus communis RepID=B9RET3_RICCO 0.0
FL-Next: sp=5'-3' exoribonuclease 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: 5 -3 exoribonuclease 0.0
Internal
sp_v2.0_unigene85773 SustainPine v2.0 386
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 2.08334e-30
Putative Complete
sp_v2.0_unigene85835 SustainPine v2.0 575
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Lotus japonicus. 0.0
Blast2go: ac051624_3 retroelement 8.81551e-35
Internal
sp_v2.0_unigene85948 SustainPine v2.0 319
AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 6.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 1.50386e-22
Internal
sp_v2.0_unigene85973 SustainPine v2.0 516
AutoFact: Exportin n=1 Tax=Cucumis melo subsp. melo RepID=E5GCF5_CUCME 1.99965e-42
FL-Next: tr=Exportin; Cucumis melo subsp. melo. 0.0
Blast2go: exportin-1-like isoform 2 0.0
Putative N-terminus
sp_v2.0_unigene86065 SustainPine v2.0 356
AutoFact: histone H4 [Hyacinthus orientalis] 4.0e-29
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: histone h4 5.72478e-38
Putative Complete
sp_v2.0_unigene86081 SustainPine v2.0 446
AutoFact: Huntingtin interacting protein, putative n=1 Tax=Ricinus communis RepID=B9RPN1_RICCO 1.0e-25
FL-Next: sp=Probable histone-lysine N-methyltransferase ATXR3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable histone-lysine n-methyltransferase atxr3-like 8.46644e-30
Internal
sp_v2.0_unigene86100 SustainPine v2.0 130
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 6.4071e-12
Internal
sp_v2.0_unigene86126 SustainPine v2.0 790
AutoFact: Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: xyloglucan endotransglucosylase hydrolase protein 9 0.0
Putative Complete
sp_v2.0_unigene86153 SustainPine v2.0 699
AutoFact: Os08g0389500 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0J5Y3_ORYSJ 4.0e-34
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: retrotransposon unclassified 3.48996e-38
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain