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Assembly Name: uma v2.0

Name: Histone deacetylase superfamily

Term: IPR000286  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uma_v2.0_unigene740 uma v2.0 1234
AutoFact: Histone deacetylase (Fragment) n=2 Tax=Malpighiales RepID=B9IEX4_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Complete
uma_v2.0_unigene889 uma v2.0 443
AutoFact: Histone deacetylase hda1, putative n=1 Tax=Ricinus communis RepID=B9RE34_RICCO 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 15 0.0
Internal
uma_v2.0_unigene1692 uma v2.0 1337
AutoFact: phosphatidylinositol 4-kinase alpha [Arabidopsis thaliana] ref|NP_850960.1| phosphatidylinositol 4-kinase alpha [Arabidopsis thaliana] sp|Q9SXA1.2|P4KA1_ARATH RecName: Full=Phosphatidylinositol 4-kinase alpha; Short=PI4-kinase alpha; Short=PtdIns-4-kinase 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
uma_v2.0_unigene2153 uma v2.0 807
AutoFact: phosphatidylinositol 4-kinase alpha [Arabidopsis thaliana] ref|NP_850960.1| phosphatidylinositol 4-kinase alpha [Arabidopsis thaliana] sp|Q9SXA1.2|P4KA1_ARATH RecName: Full=Phosphatidylinositol 4-kinase alpha; Short=PI4-kinase alpha; Short=PtdIns-4-kinase 0.0
FL-Next: sp=Phosphatidylinositol 4-kinase alpha; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
uma_v2.0_unigene2347 uma v2.0 804
AutoFact: histone deacetylase 2 [Arabidopsis thaliana] sp|Q944K3.2|HDA2_ARATH RecName: Full=Histone deacetylase 2 gb|AED93517.1| histone deacetylase 2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 2 0.0
Internal
uma_v2.0_unigene6875 uma v2.0 1425
AutoFact: probable histone deacetylase 19 [Zea mays] gb|AAP92528.1|AF322918_1 HDA1 [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
C-terminus
uma_v2.0_unigene10321 uma v2.0 1707
AutoFact: Histone deacetylase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TG19_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Complete
uma_v2.0_unigene10514 uma v2.0 842
AutoFact: PREDICTED: histone deacetylase 6-like isoform 8 [Macaca mulatta] 5.0e-22
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: histone deacetylase 0.0
Putative Complete
uma_v2.0_unigene10846 uma v2.0 467
AutoFact: Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Internal
uma_v2.0_unigene13392 uma v2.0 1085
AutoFact: histone deacetylase 14 [Arabidopsis thaliana] sp|Q941D6.1|HDA14_ARATH RecName: Full=Histone deacetylase 14 gb|AAK97704.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gb|AAM47377.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gb|AEE86231.1| histone deacetyla 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Internal
uma_v2.0_unigene13592 uma v2.0 2093
AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Complete
uma_v2.0_unigene14514 uma v2.0 1050
AutoFact: Histone deacetylase complex, catalytic component HDA1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SZN1_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
C-terminus
uma_v2.0_unigene14766 uma v2.0 504
AutoFact: phosphatidylinositol 4-kinase alpha [Arabidopsis thaliana] ref|NP_850960.1| phosphatidylinositol 4-kinase alpha [Arabidopsis thaliana] sp|Q9SXA1.2|P4KA1_ARATH RecName: Full=Phosphatidylinositol 4-kinase alpha; Short=PI4-kinase alpha; Short=PtdIns-4-kinase 0.0
FL-Next: sp=Phosphatidylinositol 4-kinase alpha; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
uma_v2.0_unigene21625 uma v2.0 622
AutoFact: Histone deacetylase RPD3/HDA1 class II n=3 Tax=Triticeae RepID=C1IC96_HORVU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 15-like 0.0
C-terminus
uma_v2.0_unigene26265 uma v2.0 209
AutoFact: histone deacetylase 5 [Arabidopsis thaliana] sp|Q8RX28.1|HDA5_ARATH RecName: Full=Histone deacetylase 5 gb|AAM13986.1| putative histone deacetylase [Arabidopsis thaliana] gb|AAM53342.1| histone deacetylase-like protein [Arabidopsis thaliana] gb|AAN15392.1 6.0e-32
Blast2go: histone deacetylase 2.68041e-37
unknown
uma_v2.0_unigene26388 uma v2.0 422
AutoFact: Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Internal
uma_v2.0_unigene28290 uma v2.0 327
AutoFact: phosphatidylinositol 4-kinase alpha [Arabidopsis thaliana] ref|NP_850960.1| phosphatidylinositol 4-kinase alpha [Arabidopsis thaliana] sp|Q9SXA1.2|P4KA1_ARATH RecName: Full=Phosphatidylinositol 4-kinase alpha; Short=PI4-kinase alpha; Short=PtdIns-4-kinase 0.0
FL-Next: sp=Phosphatidylinositol 4-kinase alpha; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
uma_v2.0_unigene29457 uma v2.0 219
AutoFact: histone deacetylase 2 [Arabidopsis thaliana] sp|Q944K3.2|HDA2_ARATH RecName: Full=Histone deacetylase 2 gb|AED93517.1| histone deacetylase 2 [Arabidopsis thaliana] 0.0
FL-Next: Isoform 3 of Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 0.0
Blast2go: histone deacetylase 2 0.0
C-terminus
uma_v2.0_unigene29856 uma v2.0 192
AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 0.0
Blast2go: histone deacetylase 0.0
unknown
uma_v2.0_unigene30059 uma v2.0 264
AutoFact: probable histone deacetylase 19 [Zea mays] gb|AAP92528.1|AF322918_1 HDA1 [Zea mays] 0.0
FL-Next: sp=Histone deacetylase 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: histone deacetylase 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain