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Assembly Name: uma v2.0

Name: SWAP/Surp

Term: IPR000061  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uma_v2.0_unigene106 uma v2.0 498
AutoFact: [DKT] COG5035 Cell cycle control protein 2.0e-35
Blast2go: cell division control protein 50 0.0
unknown
uma_v2.0_unigene1373 uma v2.0 278
AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 6.0e-16
Blast2go: helicase and zinc finger domain-containing protein 0.0
unknown
uma_v2.0_unigene1432 uma v2.0 709
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uma_v2.0_unigene6101 uma v2.0 522
AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 6.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: helicase and zinc finger domain-containing protein 0.0
Internal
uma_v2.0_unigene7027 uma v2.0 752
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable splicing factor 3a subunit 1-like 0.0
Internal
uma_v2.0_unigene7541 uma v2.0 1190
AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal
uma_v2.0_unigene9497 uma v2.0 610
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable splicing factor 3a subunit 1-like 0.0
Putative Complete
uma_v2.0_unigene11499 uma v2.0 977
AutoFact: SWAP/Surp domain-containing protein [Arabidopsis thaliana] gb|AAK64161.1| unknown protein [Arabidopsis thaliana] gb|AAM20098.1| unknown protein [Arabidopsis thaliana] gb|AED96581.1| SWAP/Surp domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swap surp domain-containing protein 0.0
Putative N-terminus
uma_v2.0_unigene14841 uma v2.0 1499
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: swap surp domain-containing protein 0.0
C-terminus
uma_v2.0_unigene15443 uma v2.0 2370
AutoFact: Splicing factor 4-like protein [Arabidopsis thaliana] sp|Q94C11.1|SUGP1_ARATH RecName: Full=SURP and G-patch domain-containing protein 1-like protein; AltName: Full=Splicing factor 4-like protein; Short=SF4-like protein gb|AAK59860.1| AT3g52120/F4F15_230 0.0
FL-Next: sp=SURP and G-patch domain-containing protein 1-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swap domain-containing protein 0.0
Complete
uma_v2.0_unigene20015 uma v2.0 709
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable splicing factor 3a subunit 1-like 0.0
N-terminus
uma_v2.0_unigene21150 uma v2.0 259
AutoFact: Splicing factor 4-like protein [Arabidopsis thaliana] sp|Q94C11.1|SUGP1_ARATH RecName: Full=SURP and G-patch domain-containing protein 1-like protein; AltName: Full=Splicing factor 4-like protein; Short=SF4-like protein gb|AAK59860.1| AT3g52120/F4F15_230 0.0
Blast2go: swap domain-containing protein 0.0
unknown
uma_v2.0_unigene22396 uma v2.0 397
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
Blast2go: probable splicing factor 3a subunit 1-like 0.0
Coding
uma_v2.0_unigene26291 uma v2.0 237
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
Blast2go: probable splicing factor 3a subunit 1-like 0.0
Putative coding
uma_v2.0_unigene29018 uma v2.0 268
AutoFact: SWAP/Surp domain-containing protein [Arabidopsis thaliana] gb|AAK64161.1| unknown protein [Arabidopsis thaliana] gb|AAM20098.1| unknown protein [Arabidopsis thaliana] gb|AED96581.1| SWAP/Surp domain-containing protein [Arabidopsis thaliana] 2.99878e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swap surp domain-containing protein 8.4218e-43
Putative C-terminus
uma_v2.0_unigene29433 uma v2.0 310
AutoFact: G patch domain-containing protein 1 [Arabidopsis thaliana] dbj|BAC42755.1| unknown protein [Arabidopsis thaliana] gb|AAP40415.1| unknown protein [Arabidopsis thaliana] gb|AED93116.1| G patch domain-containing protein 1 [Arabidopsis thaliana] 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: g patch domain-containing protein 0.0
N-terminus
uma_v2.0_unigene32755 uma v2.0 327
AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 6.0e-16
FL-Next: sp=E3 ubiquitin-protein ligase COP1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: helicase and zinc finger domain-containing protein 0.0
Internal
uma_v2.0_unigene36780 uma v2.0 333
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO 2.0e-29
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: 20-like protein 4.23164e-33
Internal
uma_v2.0_unigene38231 uma v2.0 620
AutoFact: Cell division control protein 50 n=2 Tax=Andropogoneae RepID=B6TU52_MAIZE 3.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cell division control protein 50 0.0
C-terminus
uma_v2.0_unigene38521 uma v2.0 390
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 4.0e-38
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable splicing factor 3a subunit 1-like 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain