Sustainpine_db
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Assembly Name: uma v2.0

Name: Helix-hairpin-helix motif

Term: IPR000445  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uma_v2.0_unigene3536 uma v2.0 1059
AutoFact: putative GTP-binding protein [Arabidopsis thaliana] emb|CAB87708.1| putative GTP-binding protein [Arabidopsis thaliana] gb|AAL25554.1| AT5g11480/F15N18_70 [Arabidopsis thaliana] gb|AAN28859.1| At5g11480/F15N18_70 [Arabidopsis thaliana] gb|AED91684.1| puta 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gtp-binding protein 0.0
C-terminus
uma_v2.0_unigene4065 uma v2.0 735
AutoFact: Ubiquitin carrier protein (Fragment) n=2 Tax=Magnoliophyta RepID=Q677E9_HYAOR 5.0e-34
Blast2go: ubiquitin carrier protein 1.51761e-41
unknown
uma_v2.0_unigene5194 uma v2.0 548
AutoFact: DNA repair protein RAD51 homolog n=1 Tax=Solanum lycopersicum RepID=RAD51_SOLLC 0.0
FL-Next: sp=DNA repair protein RAD51 homolog; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Blast2go: dna repair protein rad51 homolog 0.0
N-terminus
uma_v2.0_unigene6114 uma v2.0 731
AutoFact: kinesin family member 22 [Arabidopsis thaliana] gb|AAX12877.1| At5g02370 [Arabidopsis thaliana] gb|AED90464.1| kinesin family member 22 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: kinesin-like protein kif22-like 0.0
Putative N-terminus
uma_v2.0_unigene8658 uma v2.0 987
AutoFact: Excision repair cross-complementing 1 ercc1, putative n=1 Tax=Ricinus communis RepID=B9RF25_RICCO 0.0
FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna excision repair protein ercc-1 0.0
C-terminus
uma_v2.0_unigene11072 uma v2.0 646
AutoFact: A/G-specific adenine glycosylase [Arabidopsis thaliana] gb|AEE83174.1| A/G-specific adenine glycosylase [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: a g-specific adenine dna glycosylase 0.0
N-terminus
uma_v2.0_unigene12446 uma v2.0 934
AutoFact: ubiquitin conjugating enzyme-like [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubc37 like protein 0.0
Putative Complete
uma_v2.0_unigene13347 uma v2.0 1127
AutoFact: A/G-specific adenine glycosylase [Arabidopsis thaliana] gb|AEE83174.1| A/G-specific adenine glycosylase [Arabidopsis thaliana] 0.0
FL-Next: tr=A/G-specific adenine glycosylase family protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: a g-specific adenine dna glycosylase 0.0
C-terminus
uma_v2.0_unigene14522 uma v2.0 834
AutoFact: Nuclear cap-binding protein subunit 2 n=3 Tax=Andropogoneae RepID=B6TL33_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear cap-binding protein 0.0
C-terminus
uma_v2.0_unigene14901 uma v2.0 614
AutoFact: kinesin family member 22 [Arabidopsis thaliana] gb|AAX12877.1| At5g02370 [Arabidopsis thaliana] gb|AED90464.1| kinesin family member 22 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: kinesin-like protein kif22-like 0.0
C-terminus
uma_v2.0_unigene20569 uma v2.0 516
AutoFact: DNA repair protein RAD51 homolog n=1 Tax=Solanum lycopersicum RepID=RAD51_SOLLC 0.0
FL-Next: sp=DNA repair protein RAD51 homolog B; Zea mays (Maize). 0.0
Blast2go: dna repair protein rad51 homolog 0.0
C-terminus
uma_v2.0_unigene21602 uma v2.0 268
AutoFact: endonuclease III [Arabidopsis thaliana] gb|AAD26474.2| putative endonuclease [Arabidopsis thaliana] gb|AEC08549.1| endonuclease III [Arabidopsis thaliana] 1.0e-36
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: endonuclease iii 0.0
C-terminus
uma_v2.0_unigene23390 uma v2.0 440
AutoFact: ubiquitin conjugating enzyme-like [Oryza sativa Japonica Group] 0.0
Blast2go: ubc37 like protein 0.0
Putative coding
uma_v2.0_unigene24226 uma v2.0 551
AutoFact: endonuclease III [Arabidopsis thaliana] gb|AAD26474.2| putative endonuclease [Arabidopsis thaliana] gb|AEC08549.1| endonuclease III [Arabidopsis thaliana] 3.0e-34
Blast2go: endonuclease iii 1.4013e-44
unknown
uma_v2.0_unigene31435 uma v2.0 403
AutoFact: Endonuclease III, putative n=1 Tax=Ricinus communis RepID=B9T798_RICCO 1.4013e-45
FL-Next: tr=Endonuclease III homologue; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: endonuclease iii 0.0
N-terminus
uma_v2.0_unigene35129 uma v2.0 497
AutoFact: putative nucleotide repair protein [Oryza sativa Japonica Group] 0.0
Blast2go: dna excision repair protein ercc-1-like 0.0
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain