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Assembly Name: biogeco1 v2.0

Name: DNA mismatch repair protein MutS, C-terminal

Term: IPR000432  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog1_v2.0_unigene525 biogeco1 v2.0 833
AutoFact: DNA mismatch repair protein [Petunia x hybrida] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna mismatch repair protein msh6-1 0.0
Putative Complete
biog1_v2.0_unigene1545 biogeco1 v2.0 1179
AutoFact: DNA mismatch repair protein [Petunia x hybrida] 0.0
FL-Next: sp=DNA mismatch repair protein Msh6-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-1 0.0
Internal
biog1_v2.0_unigene2964 biogeco1 v2.0 1332
AutoFact: DNA polymerase III subunit epsilon n=3 Tax=Zea mays RepID=B6TZF8_MAIZE 0.0
FL-Next: tr=DNA polymerase III subunit epsilon; Zea mays (Maize). 0.0
Blast2go: dna polymerase iii polc-type-like 0.0
Complete
biog1_v2.0_unigene2979 biogeco1 v2.0 1008
AutoFact: Potassium efflux antiporter n=4 Tax=rosids RepID=B9ICA8_POPTR 0.0
FL-Next: sp=K(+) efflux antiporter 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: k(+) efflux antiporter chloroplastic-like 0.0
C-terminus
biog1_v2.0_unigene3460 biogeco1 v2.0 722
AutoFact: Unassigned protein
Blast2go: dna mismatch repair protein msh6-2 3.60484e-16
Putative coding
biog1_v2.0_unigene8068 biogeco1 v2.0 838
AutoFact: DNA mismatch repair protein MSH6-2, putative n=1 Tax=Ricinus communis RepID=B9RKT8_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein Msh6-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-2 0.0
C-terminus
biog1_v2.0_unigene14933 biogeco1 v2.0 626
AutoFact: PREDICTED: similar to KEA1 (K EFFLUX ANTIPORTER 1); potassium:hydrogen antiporter n=1 Tax=Vitis vinifera RepID=UPI0001984E30 0.0
FL-Next: sp=K(+) efflux antiporter 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: k(+) efflux antiporter chloroplastic-like 0.0
Internal
biog1_v2.0_unigene16569 biogeco1 v2.0 601
AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 0.0
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein 0.0
Internal
biog1_v2.0_unigene17097 biogeco1 v2.0 497
AutoFact: DNA mismatch repair protein MSH6-2, putative n=1 Tax=Ricinus communis RepID=B9RKT8_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein Msh6-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-2 0.0
Internal
biog1_v2.0_unigene19630 biogeco1 v2.0 255
AutoFact: DNA mismatch repair protein MSH2, putative n=1 Tax=Ricinus communis RepID=B9RE38_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein Msh2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh2 0.0
Internal
biog1_v2.0_unigene21307 biogeco1 v2.0 309
AutoFact: DNA mismatch repair protein [Petunia x hybrida] 3.0e-10
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein 1.53451e-16
Internal
biog1_v2.0_unigene21607 biogeco1 v2.0 332
AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 0.0
Blast2go: dna mismatch repair protein 0.0
unknown
biog1_v2.0_unigene22268 biogeco1 v2.0 518
AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 0.0
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein 0.0
Putative C-terminus
biog1_v2.0_unigene23160 biogeco1 v2.0 618
AutoFact: cleavage/polyadenylation specificity factor [Arabidopsis thaliana] dbj|BAC42701.1| unknown protein [Arabidopsis thaliana] gb|AAO63939.1| unknown protein [Arabidopsis thaliana] dbj|BAF00402.1| hypothetical protein [Arabidopsis thaliana] gb|AEE85076.1| clea 4.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cleavage and polyadenylation specificity factor 5 1.62096e-35
N-terminus
biog1_v2.0_unigene24357 biogeco1 v2.0 144
AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 1.0e-24
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein 4.33037e-34
Internal
biog1_v2.0_unigene30455 biogeco1 v2.0 1152
AutoFact: DNA mismatch repair protein MSH2, putative n=1 Tax=Ricinus communis RepID=B9RE38_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein MSH2; Zea mays (Maize). 0.0
Blast2go: dna mismatch repair protein msh2 0.0
C-terminus
biog1_v2.0_unigene33197 biogeco1 v2.0 619
AutoFact: DNA mismatch repair protein MSH2, putative n=1 Tax=Ricinus communis RepID=B9RE38_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein Msh2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh2 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain