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Assembly Name: biogeco2 v2.0

Name: RNA-dependent RNA polymerase, eukaryotic-type

Term: IPR007855  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene983 biogeco2 v2.0 706
AutoFact: RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum RepID=Q6L3W8_SOLDE 0.0
FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna-dependent rna polymerase 0.0
C-terminus
biog2_v2.0_unigene1683 biogeco2 v2.0 505
AutoFact: RNA-dependent RNA polymerase 6 n=1 Tax=Cucumis sativus RepID=E9NWL0_CUCSA 2.0e-38
FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna-dependent rna polymerase 6 7.77721e-43
Internal
biog2_v2.0_unigene7486 biogeco2 v2.0 462
AutoFact: RNA-directed RNA Polymerase (Fragment) n=1 Tax=Vigna unguiculata RepID=Q75ZN6_VIGUN 6.0e-26
Blast2go: rna-dependent rna polymerase 2.78958e-38
unknown
biog2_v2.0_unigene7793 biogeco2 v2.0 698
AutoFact: golgin candidate 1 [Arabidopsis thaliana] sp|Q8S8N9.2|GOGC1_ARATH RecName: Full=Golgin candidate 1; Short=AtGC1; AltName: Full=Golgin-84 gb|AAS49041.1| At2g19950 [Arabidopsis thaliana] dbj|BAF01318.1| hypothetical protein [Arabidopsis thaliana] gb|AEC0694 0.0
FL-Next: sp=Golgin candidate 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: golgin candidate 1 0.0
C-terminus
biog2_v2.0_unigene8756 biogeco2 v2.0 424
AutoFact: RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis RepID=B9RP51_RICCO 0.0
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna-dependent rna polymerase 6 0.0
C-terminus
biog2_v2.0_unigene9533 biogeco2 v2.0 219
AutoFact: RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana] sp|O82188.2|RDR5_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 5; Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase 5 gb|AEC06944.1| RNA-dependent RNA polymerase-like prot 1.0e-32
Blast2go: rna-dependent rna polymerase family protein 0.0
Coding
biog2_v2.0_unigene14805 biogeco2 v2.0 335
AutoFact: Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IKW9_POPTR 0.0
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna-dependent rna polymerase 6 0.0
Putative C-terminus
biog2_v2.0_unigene16083 biogeco2 v2.0 393
AutoFact: RNA-dependent RNA polymerase n=2 Tax=Gossypium hirsutum RepID=B2B9K0_GOSHI 0.0
FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna-dependent rna polymerase 0.0
Internal
biog2_v2.0_unigene16393 biogeco2 v2.0 347
AutoFact: RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida RepID=Q9ZRX3_PETHY 3.0e-39
FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna-directed rna polymerase 2.8026e-45
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain