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Assembly Name: biogeco2 v2.0

Name: PDZ domain

Term: IPR001478  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene589 biogeco2 v2.0 722
AutoFact: protease Do-like 7 [Arabidopsis thaliana] sp|Q8RY22.1|DEGP7_ARATH RecName: Full=Protease Do-like 7 gb|AAL84951.1| AT3g03380/T21P5_20 [Arabidopsis thaliana] gb|AAO11643.1| At3g03380/T21P5_20 [Arabidopsis thaliana] gb|AEE73938.1| protease Do-like 7 [Arabido 0.0
FL-Next: sp=Protease Do-like 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protease do-like 7-like 0.0
Internal
biog2_v2.0_unigene848 biogeco2 v2.0 519
AutoFact: D1 protease-like protein precursor [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: carboxyl-terminal-processing protease 0.0
C-terminus
biog2_v2.0_unigene3313 biogeco2 v2.0 2368
AutoFact: putative DegP2 protease [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protease do-like 9-like 0.0
Putative Complete
biog2_v2.0_unigene4366 biogeco2 v2.0 344
AutoFact: protease Do-like 10 [Arabidopsis thaliana] sp|Q9FIV6.1|DGP10_ARATH RecName: Full=Protease Do-like 10, mitochondrial; Flags: Precursor dbj|BAB11638.1| serine protease-like protein [Arabidopsis thaliana] gb|AAL47441.1| AT5g36950/MLF18_70 [Arabidopsis thalia 0.0
Blast2go: protease do-like mitochondrial-like 0.0
unknown
biog2_v2.0_unigene4464 biogeco2 v2.0 272
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene7088 biogeco2 v2.0 649
AutoFact: 26S proteasome non-ATPase regulatory subunit 9 [Arabidopsis thaliana] gb|AAM65312.1| 26S proteasome regulatory subunit p27, putative [Arabidopsis thaliana] dbj|BAC43064.1| unknown protein [Arabidopsis thaliana] gb|AAO63310.1| At5g57950 [Arabidopsis thalia 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: 26s proteasome non-atpase regulatory subunit 9 0.0
N-terminus
biog2_v2.0_unigene7734 biogeco2 v2.0 404
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T3Z6_RICCO 0.0
Blast2go: protease do-like 7-like 0.0
unknown
biog2_v2.0_unigene8597 biogeco2 v2.0 428
AutoFact: protease Do-like 7 [Arabidopsis thaliana] sp|Q8RY22.1|DEGP7_ARATH RecName: Full=Protease Do-like 7 gb|AAL84951.1| AT3g03380/T21P5_20 [Arabidopsis thaliana] gb|AAO11643.1| At3g03380/T21P5_20 [Arabidopsis thaliana] gb|AEE73938.1| protease Do-like 7 [Arabido 0.0
FL-Next: sp=Protease Do-like 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protease do-like 7-like 0.0
C-terminus
biog2_v2.0_unigene11366 biogeco2 v2.0 441
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
FL-Next: sp=Putative pumilio homolog 7, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene13119 biogeco2 v2.0 294
AutoFact: Protease degQ, putative n=1 Tax=Ricinus communis RepID=B9SF71_RICCO 0.0
FL-Next: sp=Protease Do-like 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: serine-type peptidase 0.0
Internal
biog2_v2.0_unigene14028 biogeco2 v2.0 304
AutoFact: protease Do-like 7 [Arabidopsis thaliana] sp|Q8RY22.1|DEGP7_ARATH RecName: Full=Protease Do-like 7 gb|AAL84951.1| AT3g03380/T21P5_20 [Arabidopsis thaliana] gb|AAO11643.1| At3g03380/T21P5_20 [Arabidopsis thaliana] gb|AEE73938.1| protease Do-like 7 [Arabido 0.0
FL-Next: sp=Protease Do-like 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene14433 biogeco2 v2.0 115
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T3Z6_RICCO 0.0
Blast2go: protease do-like 7-like 0.0
unknown
biog2_v2.0_unigene15113 biogeco2 v2.0 412
AutoFact: Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) (ISS) [Ostreococcus tauri] emb|CAL57619.1| Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) (ISS) [Ostreococcus tauri] 1.99965e-42
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene16257 biogeco2 v2.0 286
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T3Z6_RICCO 0.0
FL-Next: sp=Protease Do-like 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protease do-like 7-like 0.0
Putative C-terminus
biog2_v2.0_unigene17463 biogeco2 v2.0 721
AutoFact: protease Do-like 7 [Arabidopsis thaliana] sp|Q8RY22.1|DEGP7_ARATH RecName: Full=Protease Do-like 7 gb|AAL84951.1| AT3g03380/T21P5_20 [Arabidopsis thaliana] gb|AAO11643.1| At3g03380/T21P5_20 [Arabidopsis thaliana] gb|AEE73938.1| protease Do-like 7 [Arabido 0.0
FL-Next: sp=Protease Do-like 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protease do-like 7-like 0.0
Internal
biog2_v2.0_unigene18118 biogeco2 v2.0 435
AutoFact: rubredoxin family protein [Arabidopsis thaliana] dbj|BAB10504.1| unnamed protein product [Arabidopsis thaliana] gb|AAK59624.1| unknown protein [Arabidopsis thaliana] gb|AAN41384.1| unknown protein [Arabidopsis thaliana] gb|AED92391.1| rubredoxin family pr 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene18256 biogeco2 v2.0 140
AutoFact: DSPc multi-domain protein 7.0e-08
Blast2go: protein like sex4 1 0.0
unknown
biog2_v2.0_unigene18487 biogeco2 v2.0 294
AutoFact: 26S proteasome non-ATPase regulatory subunit 9 [Arabidopsis thaliana] gb|AAM65312.1| 26S proteasome regulatory subunit p27, putative [Arabidopsis thaliana] dbj|BAC43064.1| unknown protein [Arabidopsis thaliana] gb|AAO63310.1| At5g57950 [Arabidopsis thalia 0.0
Blast2go: 26s proteasome non-atpase regulatory subunit 9 0.0
unknown
biog2_v2.0_unigene18524 biogeco2 v2.0 530
AutoFact: D1 protease-like protein precursor [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: carboxyl-terminal-processing protease 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain